BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017558
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...   112   2e-23
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   110   2e-22
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   105   3e-21
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   105   3e-21
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   105   3e-21

>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score =  112 bits (281), Expect = 2e-23
 Identities = 54/102 (52%), Positives = 73/102 (71%)
 Frame = -3

Query: 334 GLLKPERGIRQGDPLLPFLFIICAEVLSRLLDKAEINKQIHGIKISRSDTPISHLLFADV 155
           G + P RG+RQGDPL P+LFI+CAE +S L+ +AE N  +HG+K+ +    +SHLLFAD 
Sbjct: 217 GPIYPGRGLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADD 276

Query: 154 SFIFCRANIDESHKLRDTLDVFKNVSGQEINFQKYGIFFSKN 29
           SF+F RAN +E+  L+D LD + N S Q IN QK  I+FS+N
Sbjct: 277 SFLFFRANENETRALKDILDTYANASDQLINMQKSEIYFSRN 318


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  110 bits (274), Expect = 2e-22
 Identities = 54/101 (53%), Positives = 69/101 (68%)
 Frame = -3

Query: 334  GLLKPERGIRQGDPLLPFLFIICAEVLSRLLDKAEINKQIHGIKISRSDTPISHLLFADV 155
            G + P RGIRQGDPL P+LF+ CAEVLS +L KAE+NKQIHG+KI++    ISHLLFAD 
Sbjct: 987  GKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADD 1046

Query: 154  SFIFCRANIDESHKLRDTLDVFKNVSGQEINFQKYGIFFSK 32
            S  FCRA+     +L      ++  SGQ+IN+ K  I F +
Sbjct: 1047 SLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQ 1087


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/99 (51%), Positives = 67/99 (67%)
 Frame = -3

Query: 322  PERGIRQGDPLLPFLFIICAEVLSRLLDKAEINKQIHGIKISRSDTPISHLLFADVSFIF 143
            PERG+RQGDPL P+LF++CAE  S LL K E   ++HGI+I +    +SHLLFAD S I 
Sbjct: 830  PERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLIL 889

Query: 142  CRANIDESHKLRDTLDVFKNVSGQEINFQKYGIFFSKNT 26
            CRAN  E+ +L+  L +++  SGQ IN  K  + FS NT
Sbjct: 890  CRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNT 928


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/99 (51%), Positives = 67/99 (67%)
 Frame = -3

Query: 322  PERGIRQGDPLLPFLFIICAEVLSRLLDKAEINKQIHGIKISRSDTPISHLLFADVSFIF 143
            PERG+RQGDPL P+LF++CAE  S LL K E   ++HGI+I +    +SHLLFAD S I 
Sbjct: 858  PERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLIL 917

Query: 142  CRANIDESHKLRDTLDVFKNVSGQEINFQKYGIFFSKNT 26
            CRAN  E+ +L+  L +++  SGQ IN  K  + FS NT
Sbjct: 918  CRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNT 956


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/99 (51%), Positives = 67/99 (67%)
 Frame = -3

Query: 322  PERGIRQGDPLLPFLFIICAEVLSRLLDKAEINKQIHGIKISRSDTPISHLLFADVSFIF 143
            PERG+RQGDPL P+LF++CAE  S LL K E   ++HGI+I +    +SHLLFAD S I 
Sbjct: 826  PERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLIL 885

Query: 142  CRANIDESHKLRDTLDVFKNVSGQEINFQKYGIFFSKNT 26
            CRAN  E+ +L+  L +++  SGQ IN  K  + FS NT
Sbjct: 886  CRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNT 924