BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017498
         (619 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|2...   121   9e-26
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...   119   3e-25
ref|XP_002532715.1| conserved hypothetical protein [Ricinus comm...   113   2e-23
ref|XP_002516807.1| ubiquitin-protein ligase, putative [Ricinus ...   110   2e-22
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   110   3e-22

>ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1|
           predicted protein [Populus trichocarpa]
          Length = 408

 Score =  121 bits (304), Expect = 9e-26
 Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 35/240 (14%)
 Frame = -3

Query: 617 RFRCVSKAWYALLDDPAFVDRHFNNQSMERNCLNKSAIFLDPLNSIYSLDFETLNSRVID 438
           RFRCVSK+W   +D P F++ H    S     LN   + L    ++ ++D ++ +   I+
Sbjct: 22  RFRCVSKSWCKEIDSPYFINTHLKRSSQAHTHLN---LILRDATNLCTVDLDSPDFTSIE 78

Query: 437 ---NPLKTWVSGMSGISFWGSCNGLVLITSSENN-CLWNPATQKHKMLPTALFE------ 288
              NPLK   S        GSCNGL+ + +S+ +  L+NP+T++ KM+P +  E      
Sbjct: 79  LKNNPLK---SDDCATEVMGSCNGLLALLNSDFSIALYNPSTREKKMIPVSPLELPNDLD 135

Query: 287 ---EKPVMNIYGFGYNATLQDYEVVNI--------GSLLNCFEVGVYSVKRNSWRRIQDF 141
                 + N YGFG++   +DY+VV              +C EV VYS+K NSW+RI D+
Sbjct: 136 DSKVSSLFNFYGFGHDPINEDYKVVRFIHFYGDSPDGFFHC-EVKVYSLKSNSWKRIDDY 194

Query: 140 PYSIPF-----------RWEGAFTNGAVHW---VAQRSRKNGLSLNSAIIAYDVGGESFR 3
           PY + F           R  G F N AVHW   V  + ++NG  L   I+A+D+G E F+
Sbjct: 195 PYDLRFILPPDYHPRCRRGYGVFANSAVHWKATVVGKGKENGSDL---IVAFDLGAEEFK 251


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score =  119 bits (299), Expect = 3e-25
 Identities = 77/218 (35%), Positives = 121/218 (55%), Gaps = 16/218 (7%)
 Frame = -3

Query: 611 RCVSKAWYALLDDPAFVDRHFNNQSMERNCLNKSAIFLDPLNSIYSLDFETL-NSRVIDN 435
           RCVSK W  L+D P F+  H N+ S+E  C N S I     + +YSL F+ L N + +D+
Sbjct: 25  RCVSKRWRTLIDSPTFIYLHLNH-SIESPC-NLSIILKS--SELYSLSFDLLDNIQPLDH 80

Query: 434 PLKTWVSGMSGISFWGSCNGLVLITSSENN-CLWNPATQKHKMLPTALFEEKPV------ 276
           PL  +     G+   GSCNGL+ I +  ++  LWNP+ + H+++P    E K        
Sbjct: 81  PLMCY---NHGVKILGSCNGLLCICNIVDDIALWNPSIRAHRVVPYLPVELKRYFGMCSC 137

Query: 275 -MNIYGFGYNATLQDYEVVNIGSLLNC------FEVGVYSVKRNSWRRIQDFPYSIPFRW 117
            ++++GFGY+ +  DY++V I             EV V+S+++NSWRRI D PY + +  
Sbjct: 138 RVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYPG 197

Query: 116 E-GAFTNGAVHWVAQRSRKNGLSLNSAIIAYDVGGESF 6
           E G + NGA+HW+   S+    ++   I+A D+G E +
Sbjct: 198 ENGIYANGALHWLV--SQDPDSTVADTIVALDLGVEDY 233


>ref|XP_002532715.1| conserved hypothetical protein [Ricinus communis]
           gi|223527542|gb|EEF29664.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 395

 Score =  113 bits (283), Expect = 2e-23
 Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 33/238 (13%)
 Frame = -3

Query: 617 RFRCVSKAWYALLDDPAFVDRHFNNQSMERNCLNKSAIFLDPLNSIYSLDFETLNS---- 450
           RFRC+SK   +L+D P F+D H ++    R+  N   I  D   ++Y+LDF++L+S    
Sbjct: 23  RFRCLSKPLCSLIDSPDFIDHHLSHSLKTRS--NLFLILRD--WNLYTLDFDSLSSVSPA 78

Query: 449 --RVIDNPLKTWVSGMSGISFWGSCNGLVLITSSENN-CLWNPATQKHKMLPTALFE--- 288
              V+ +PL+       G    GSCNGL+ + +SE +  L+NPAT+K+K +P +  E   
Sbjct: 79  AADVLIHPLQKG----GGTEAVGSCNGLLALRNSERDLALYNPATRKYKRVPVSEIEPPD 134

Query: 287 --EKPVMNIYGFGYNATLQDYEVVNIGSLL----NC------FEVGVYSVKRNSWRRIQD 144
              K     YGFG+++  +DY ++ + + +     C      ++V VYS+K +SW+RI+ 
Sbjct: 135 RNSKTGYVFYGFGFDSVSEDYRLIRMATFVGEDDRCESFDYEYQVQVYSLKNDSWKRIKG 194

Query: 143 FPYSIPF-----------RWEGAFTNGAVHWVAQRSRKNGLSLNSAIIAYDVGGESFR 3
            PY + F           R  G F   A+HWV     +  L +N++IIA+D+  E+F+
Sbjct: 195 LPYYLRFLYKPFFQVLHRRGYGVFACNALHWVMPHWPE--LGVNNSIIAFDIVNETFQ 250


>ref|XP_002516807.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223543895|gb|EEF45421.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 358

 Score =  110 bits (275), Expect = 2e-22
 Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 13/217 (5%)
 Frame = -3

Query: 617 RFRCVSKAWYALLDDPAFVDRHFNNQSMERNCLN----KSAIFLDPLNSIYSLDFETLNS 450
           RF+ V K+W+ L+ DP F+  H +  + + NC+N    +  +    L S+YS+ +E  + 
Sbjct: 23  RFKVVCKSWWLLISDPHFISMHLS-LATKNNCINCHRWRLCLTSFSLPSVYSVGYEASDR 81

Query: 449 RV---IDNPLKTWVSGMSGISFWGSCNGLVLITSSENNCLW-NPATQKHKMLPTA----L 294
            +   +  PLK+       + F GSCNGL+ + S     L  NP+T+  + +P       
Sbjct: 82  AIAIKLGYPLKS--DCYDEVKFIGSCNGLLCVASEPGVLLLLNPSTRAAQEIPRLGNRRP 139

Query: 293 FEEKPVMNIYGFGYNATLQDYEVVNIGSLLNCFEVGVYSVKRNSWRRIQDFPYSIPFRWE 114
           F +  +  +YGFGY  ++ DY++V I S   C  V VYSVK NSWR +  FPYSI     
Sbjct: 140 FTQSSLPYMYGFGYAHSINDYKLVKI-SCRGC--VFVYSVKENSWRSVGGFPYSILALDP 196

Query: 113 GAFTNGAVHWVAQRSRKNGLSLNSAII-AYDVGGESF 6
           G   NGA+HWV  RS+    S  S II A+D+  E F
Sbjct: 197 GIQLNGAIHWVVSRSKD---STKSQIIGAFDLVEEKF 230


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score =  110 bits (274), Expect = 3e-22
 Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 22/225 (9%)
 Frame = -3

Query: 611 RCVSKAWYALLDDPAFVDRHFNNQSMERNCLNKSAIFLDPLNSIYSLDFE---TLNSRV- 444
           R VSK W AL+D P FV  H  + SM+ +  +   I L   + ++ +DFE    LN  V 
Sbjct: 25  RSVSKPWCALIDGPNFVKLHLKH-SMDTS--SNLYIILRTTSHVHYMDFEQNLVLNDCVT 81

Query: 443 ---IDNPLKTWVSGMSGISFWGSCNGLVLITSSENN-CLWNPATQKHKMLPTALFEEKPV 276
              +++PL  +     GI   GS NGL+ I++  ++  +WNP+T+KH+++P    E K  
Sbjct: 82  LKELNHPLMCY---NHGIKVLGSVNGLLCISNVVDDIAVWNPSTRKHRVVPFLPIELKRY 138

Query: 275 MN-------IYGFGYNATLQDYEVVNI----GSLLNCFE--VGVYSVKRNSWRRIQDFPY 135
                    ++GFGY++   DY++V I    G     FE  V VYS+++ SWRRI D PY
Sbjct: 139 FGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSFESEVKVYSLRKQSWRRIGDMPY 198

Query: 134 SIPFRW-EGAFTNGAVHWVAQRSRKNGLSLNSAIIAYDVGGESFR 3
            + +    G F NGA+HWV   + ++ ++  + ++A D+G E +R
Sbjct: 199 CVHYPGANGVFANGALHWVVGENPESNVA--NIVVALDLGVEDYR 241