BLASTX nr result
ID: Coptis24_contig00017407
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00017407
(559 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat... 171 6e-41
ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containi... 171 7e-41
emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera] 169 4e-40
ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containi... 168 6e-40
emb|CBI22140.3| unnamed protein product [Vitis vinifera] 167 1e-39
>ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 171 bits (434), Expect = 6e-41
Identities = 83/187 (44%), Positives = 126/187 (67%), Gaps = 1/187 (0%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWR 180
VSWT ++AG L +A K+F+EMP +N V+WN +I G + G + +A+ FD MP R
Sbjct: 190 VSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR 249
Query: 181 NTASWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMV 360
N S+T MI GY+K G++ A F+F++ ER+VVAW+A+I+ YVQNG+P EAVK+F EM
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMC 309
Query: 361 AANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSH-LRILNSAINMYVQCGSI 537
+ NVK D M++L+SA SQ+GSL L W++D + + H ++ + I+M +CGS+
Sbjct: 310 SRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSM 369
Query: 538 GKAFEIF 558
+A ++F
Sbjct: 370 DRATKLF 376
Score = 60.1 bits (144), Expect = 2e-07
Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 46/231 (19%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWR 180
VS+T ++ G ++G + A +F E P R+VV W+ +I G + G A F M R
Sbjct: 252 VSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSR 311
Query: 181 NT----------------------ASWT------------------IMIGGYSKVGNVDK 240
N A W +I +K G++D+
Sbjct: 312 NVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDR 371
Query: 241 AGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQ 420
A LF++M +R+++++ +M+ +G +AV LF+ M+ + D V +++A S+
Sbjct: 372 ATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSR 431
Query: 421 LGSLNLCAWIEDCIMEGGFKSHLRILNS------AINMYVQCGSIGKAFEI 555
G ++ E C K+ I+ S +++ + G + +A+E+
Sbjct: 432 AGLVD-----EGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYEL 477
>ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product
[Vitis vinifera]
Length = 580
Score = 171 bits (433), Expect = 7e-41
Identities = 81/188 (43%), Positives = 122/188 (64%), Gaps = 2/188 (1%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWR 180
+SW +++G R G +E+A +F +MP RN +WN MI G +G I++A+ +FD MP R
Sbjct: 206 ISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQR 265
Query: 181 NTASWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMV 360
N SW MI GYSK G+VD A LFDQ+ ++++ + AMI CY QN +P+EA+KLFN M+
Sbjct: 266 NNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNML 325
Query: 361 --AANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSHLRILNSAINMYVQCGS 534
NV+ D +T+ +++SA SQLG L WIE + G + + + +++Y +CGS
Sbjct: 326 NPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGS 385
Query: 535 IGKAFEIF 558
I KA+E+F
Sbjct: 386 IDKAYELF 393
Score = 107 bits (268), Expect = 1e-21
Identities = 64/183 (34%), Positives = 100/183 (54%)
Frame = +1
Query: 10 TVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWRNTA 189
T +V C+ G +E A K+F+EM RNVV+WN M+ G + G + AQ FD +P ++
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 206
Query: 190 SWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAAN 369
SW MI GY++ G+++KA LF QM ER +W AMI+ YV+ G + A F+ M N
Sbjct: 207 SWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQRN 266
Query: 370 VKLDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSHLRILNSAINMYVQCGSIGKAF 549
V+ + ++S S+ G ++ + D + GG L + N+ I Y Q +A
Sbjct: 267 ----NVSWMTMISGYSKCGDVDSACELFDQV--GG--KDLLLFNAMIACYAQNSRPKEAL 318
Query: 550 EIF 558
++F
Sbjct: 319 KLF 321
Score = 61.2 bits (147), Expect = 1e-07
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 41/183 (22%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRM--- 171
VSW +++G + G ++ A ++F+++ ++++ +N MI A+ + A F+ M
Sbjct: 268 VSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNP 327
Query: 172 ---------------------------PWRNTASW-----------TIMIGGYSKVGNVD 237
PW + T ++ Y+K G++D
Sbjct: 328 DVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSID 387
Query: 238 KAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVS 417
KA LF + ++++VA+TAMI NGK +A+KLF+EMV A + + +T + L++A +
Sbjct: 388 KAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYN 447
Query: 418 QLG 426
G
Sbjct: 448 HAG 450
>emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 169 bits (427), Expect = 4e-40
Identities = 80/188 (42%), Positives = 121/188 (64%), Gaps = 2/188 (1%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWR 180
+SW +++G R G +E+A +F +MP RN +WN MI G +G I++A+ +FD MP
Sbjct: 202 ISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQX 261
Query: 181 NTASWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMV 360
N SW MI GYSK G+VD A LFDQ+ ++++ + AMI CY QN +P+EA+KLFN M+
Sbjct: 262 NNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNML 321
Query: 361 --AANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSHLRILNSAINMYVQCGS 534
NV+ D +T+ +++SA SQLG L WIE + G + + + +++Y +CGS
Sbjct: 322 NPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGS 381
Query: 535 IGKAFEIF 558
I KA+E+F
Sbjct: 382 IDKAYELF 389
Score = 107 bits (268), Expect = 1e-21
Identities = 64/183 (34%), Positives = 100/183 (54%)
Frame = +1
Query: 10 TVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWRNTA 189
T +V C+ G +E A K+F+EM RNVV+WN M+ G + G + AQ FD +P ++
Sbjct: 143 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 202
Query: 190 SWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAAN 369
SW MI GY++ G+++KA LF QM ER +W AMI+ YV+ G + A F+ M N
Sbjct: 203 SWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQXN 262
Query: 370 VKLDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSHLRILNSAINMYVQCGSIGKAF 549
V+ + ++S S+ G ++ + D + GG L + N+ I Y Q +A
Sbjct: 263 ----NVSWMTMISGYSKCGDVDSACELFDQV--GG--KDLLLFNAMIACYAQNSRPKEAL 314
Query: 550 EIF 558
++F
Sbjct: 315 KLF 317
Score = 59.7 bits (143), Expect = 3e-07
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 41/183 (22%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRM--- 171
VSW +++G + G ++ A ++F+++ ++++ +N MI A+ + A F+ M
Sbjct: 264 VSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNP 323
Query: 172 ---------------------------PWRNTASW-----------TIMIGGYSKVGNVD 237
PW + T ++ Y+K G++D
Sbjct: 324 DVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSID 383
Query: 238 KAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVS 417
KA LF + ++++VA+TAMI NGK +A+KLF+EMV A + + +T + L++A +
Sbjct: 384 KAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTAYN 443
Query: 418 QLG 426
G
Sbjct: 444 HAG 446
>ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 168 bits (425), Expect = 6e-40
Identities = 79/188 (42%), Positives = 120/188 (63%), Gaps = 2/188 (1%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWR 180
+SW +++G R G +E+A +F +MP RN +WN MI G +G I++A+ +FD MP +
Sbjct: 206 ISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQK 265
Query: 181 NTASWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMV 360
N SW MI GYSK G+VD A LFDQ+ ++++ + AMI CY QN +P EA+ LFN M+
Sbjct: 266 NNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNML 325
Query: 361 --AANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSHLRILNSAINMYVQCGS 534
NV+ D +T+ +++SA SQLG L WIE + G + + + +++Y +CGS
Sbjct: 326 NPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGS 385
Query: 535 IGKAFEIF 558
I KA+E+F
Sbjct: 386 IDKAYELF 393
Score = 107 bits (268), Expect = 1e-21
Identities = 63/183 (34%), Positives = 99/183 (54%)
Frame = +1
Query: 10 TVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWRNTA 189
T +V C+ G +E A K+F+EM RNVV+WN M+ G + G + AQ FD +P ++
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 206
Query: 190 SWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAAN 369
SW MI GY++ G+++KA LF QM ER +W AMI+ +V+ G + A F+ M N
Sbjct: 207 SWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKN 266
Query: 370 VKLDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSHLRILNSAINMYVQCGSIGKAF 549
V+ + ++S S+ G ++ + D + GG L + N+ I Y Q +A
Sbjct: 267 ----NVSWMTMISGYSKCGDVDSACELFDQV--GG--KDLLLFNAMIACYAQNSRPNEAL 318
Query: 550 EIF 558
+F
Sbjct: 319 NLF 321
Score = 61.2 bits (147), Expect = 1e-07
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 41/183 (22%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRM--P 174
VSW +++G + G ++ A ++F+++ ++++ +N MI A+ A F+ M P
Sbjct: 268 VSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNP 327
Query: 175 WRNT----------------------ASW-----------------TIMIGGYSKVGNVD 237
+ N W T ++ Y+K G++D
Sbjct: 328 YVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSID 387
Query: 238 KAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVS 417
KA LF + ++++VA+TAMI NGK +A+KLF+EMV A + + +T + L++A +
Sbjct: 388 KAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYN 447
Query: 418 QLG 426
G
Sbjct: 448 HAG 450
>emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 167 bits (423), Expect = 1e-39
Identities = 80/188 (42%), Positives = 120/188 (63%), Gaps = 2/188 (1%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRMPWR 180
VSW ++AG + G +E+A +F +MP RN +WN MI G +G I++A+ +FD MP +
Sbjct: 54 VSWNSMLAGYLKAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQK 113
Query: 181 NTASWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMV 360
N SW MI GYSK G+VD A LFDQ+ ++++ + AMI CY QN +P EA+ LFN M+
Sbjct: 114 NNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNML 173
Query: 361 --AANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSHLRILNSAINMYVQCGS 534
NV+ D +T+ +++SA SQLG L WIE + G + + + +++Y +CGS
Sbjct: 174 NPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGS 233
Query: 535 IGKAFEIF 558
I KA+E+F
Sbjct: 234 IDKAYELF 241
Score = 79.0 bits (193), Expect = 5e-13
Identities = 48/150 (32%), Positives = 76/150 (50%)
Frame = +1
Query: 109 MIDGLARYGAIETAQCYFDRMPWRNTASWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAW 288
++D + G +E A+ FD M RN SW M+ GY K G+++KA LF QM ER +W
Sbjct: 28 LVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPERNFASW 87
Query: 289 TAMITCYVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCIME 468
AMI+ +V+ G + A F+ M N V+ + ++S S+ G ++ + D +
Sbjct: 88 NAMISGHVEFGDIDSARSFFDAMPQKN----NVSWMTMISGYSKCGDVDSACELFDQV-- 141
Query: 469 GGFKSHLRILNSAINMYVQCGSIGKAFEIF 558
GG L + N+ I Y Q +A +F
Sbjct: 142 GG--KDLLLFNAMIACYAQNSRPNEALNLF 169
Score = 61.2 bits (147), Expect = 1e-07
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 41/183 (22%)
Frame = +1
Query: 1 VSWTVIVAGLCRNGLLEQAEKIFNEMPIRNVVTWNVMIDGLARYGAIETAQCYFDRM--P 174
VSW +++G + G ++ A ++F+++ ++++ +N MI A+ A F+ M P
Sbjct: 116 VSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNP 175
Query: 175 WRNT----------------------ASW-----------------TIMIGGYSKVGNVD 237
+ N W T ++ Y+K G++D
Sbjct: 176 YVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSID 235
Query: 238 KAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVS 417
KA LF + ++++VA+TAMI NGK +A+KLF+EMV A + + +T + L++A +
Sbjct: 236 KAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYN 295
Query: 418 QLG 426
G
Sbjct: 296 HAG 298
Score = 57.4 bits (137), Expect = 2e-06
Identities = 33/121 (27%), Positives = 63/121 (52%)
Frame = +1
Query: 196 TIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVK 375
T ++ Y K+G+++ A +FD+M ER VV+W +M+ Y++ G E+A LF +M N
Sbjct: 26 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPERNF- 84
Query: 376 LDGVTMLALVSAVSQLGSLNLCAWIEDCIMEGGFKSHLRILNSAINMYVQCGSIGKAFEI 555
+ A++S + G ++ D + + S + +++ Y +CG + A E+
Sbjct: 85 ---ASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISG----YSKCGDVDSACEL 137
Query: 556 F 558
F
Sbjct: 138 F 138