BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017291
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat...   148   5e-34
ref|XP_002533336.1| pentatricopeptide repeat-containing protein,...   144   6e-33
ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   139   2e-31
ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat...   139   2e-31
ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp....   137   1e-30

>ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  148 bits (373), Expect = 5e-34
 Identities = 78/110 (70%), Positives = 86/110 (78%)
 Frame = +3

Query: 39  GFEQATPVGNSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALN 218
           G E   P+ NSLI+MYLK   K M +ALN F S+E+KD VS NSILTGFSQ+GLSEDAL 
Sbjct: 333 GLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALK 392

Query: 219 FFAWMRSMPLEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFETNDF 368
           FF  MRS  + IDHY+ SAVLRSCSDLAT QLGQQVHVLVLKSGFE N F
Sbjct: 393 FFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGF 442



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 55/101 (54%)
 Frame = +3

Query: 66  NSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALNFFAWMRSMP 245
           N++IS Y K  +  +  A   F     +D+VS N+++ GF   G  E AL F   M+   
Sbjct: 38  NNIISGYAKCGEIRI--ASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYG 95

Query: 246 LEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFETNDF 368
             +D YS  ++L+  + +   ++GQQVH +++K G+E N F
Sbjct: 96  FAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVF 136



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/93 (33%), Positives = 52/93 (55%)
 Frame = +3

Query: 39  GFEQATPVGNSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALN 218
           GFE    V +SLI MY K     + DA   F++     S++ NS++ G++Q+G  + AL+
Sbjct: 436 GFEPNGFVASSLIFMYSKCG--VIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALD 493

Query: 219 FFAWMRSMPLEIDHYSLSAVLRSCSDLATFQLG 317
            F  M+   +++DH +  AVL +CS +   + G
Sbjct: 494 LFFLMKDRRVKLDHITFVAVLTACSHIGLVEEG 526


>ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526827|gb|EEF29045.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 708

 Score =  144 bits (364), Expect = 6e-33
 Identities = 73/110 (66%), Positives = 86/110 (78%)
 Frame = +3

Query: 39  GFEQATPVGNSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALN 218
           G EQ  P+ N++I+MYL+ S   M DALN F+SMESKD VS NSILTGFSQ G SE+AL 
Sbjct: 332 GLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALK 391

Query: 219 FFAWMRSMPLEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFETNDF 368
            F  MR   ++IDHY+ SAVLRSCSDLAT QLGQQ+HVL +KSGFE+NDF
Sbjct: 392 LFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDF 441



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/97 (29%), Positives = 55/97 (56%)
 Frame = +3

Query: 66  NSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALNFFAWMRSMP 245
           N+++S Y + S   +  A N F+ M  +D+V+ N++++G+  +G    A   +  M+S  
Sbjct: 38  NNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFG 97

Query: 246 LEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFE 356
           L  D Y+  ++L+  +      +GQQVH L++K G+E
Sbjct: 98  LMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYE 134


>ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  139 bits (350), Expect = 2e-31
 Identities = 72/110 (65%), Positives = 83/110 (75%)
 Frame = +3

Query: 39  GFEQATPVGNSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALN 218
           GFEQ+ P+ N+LISMYLK     M +AL  F S+E KD VS NSILTG SQ G SEDA+ 
Sbjct: 332 GFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVK 391

Query: 219 FFAWMRSMPLEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFETNDF 368
            F  MRS  ++IDHYS SAVLRSCSDLATFQLGQQ+HVL LK G E+N+F
Sbjct: 392 SFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEF 441



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/99 (32%), Positives = 54/99 (54%)
 Frame = +3

Query: 66  NSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALNFFAWMRSMP 245
           N++++ Y K  +    D L  F+ M  +DSVS N+++ G    G  E + +    MRS  
Sbjct: 37  NNILNGYWKCKELRSADVL--FDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCG 94

Query: 246 LEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFETN 362
            E+D Y+  ++L+  +    F LGQQVH +++K G+  N
Sbjct: 95  FELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAEN 133


>ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  139 bits (350), Expect = 2e-31
 Identities = 72/110 (65%), Positives = 83/110 (75%)
 Frame = +3

Query: 39  GFEQATPVGNSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALN 218
           GFEQ+ P+ N+LISMYLK     M +AL  F S+E KD VS NSILTG SQ G SEDA+ 
Sbjct: 332 GFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVK 391

Query: 219 FFAWMRSMPLEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFETNDF 368
            F  MRS  ++IDHYS SAVLRSCSDLATFQLGQQ+HVL LK G E+N+F
Sbjct: 392 SFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEF 441



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/99 (32%), Positives = 54/99 (54%)
 Frame = +3

Query: 66  NSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALNFFAWMRSMP 245
           N++++ Y K  +    D L  F+ M  +DSVS N+++ G    G  E + +    MRS  
Sbjct: 37  NNILNGYWKCKELRSADVL--FDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCG 94

Query: 246 LEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFETN 362
            E+D Y+  ++L+  +    F LGQQVH +++K G+  N
Sbjct: 95  FELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAEN 133


>ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297322779|gb|EFH53200.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  137 bits (344), Expect = 1e-30
 Identities = 68/110 (61%), Positives = 83/110 (75%)
 Frame = +3

Query: 39  GFEQATPVGNSLISMYLKVSDKCMVDALNQFNSMESKDSVSRNSILTGFSQNGLSEDALN 218
           G EQ T V N+LISMY++     M DAL+ F S++ KD VS NSI+TGFSQNGLSEDA+ 
Sbjct: 281 GLEQVTSVSNALISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVK 340

Query: 219 FFAWMRSMPLEIDHYSLSAVLRSCSDLATFQLGQQVHVLVLKSGFETNDF 368
           FF ++RS  +E+D Y+ SAVLRSCSDLAT QLGQQ H L  KS FE+N+F
Sbjct: 341 FFRYLRSSNIEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEF 390



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/78 (37%), Positives = 47/78 (60%)
 Frame = +3

Query: 129 FNSMESKDSVSRNSILTGFSQNGLSEDALNFFAWMRSMPLEIDHYSLSAVLRSCSDLATF 308
           F+ M  +DSVS N++++G++  G  E++   F  M+     +D YS S +L+  +    F
Sbjct: 4   FDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAKRF 63

Query: 309 QLGQQVHVLVLKSGFETN 362
            LG+QVH LV+K G+E N
Sbjct: 64  DLGEQVHGLVVKGGYECN 81