BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017285
         (2088 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   358   e-119
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             418   e-114
gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|43780...   323   e-113
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     343   e-113
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                407   e-111

>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  358 bits (920), Expect(2) = e-119
 Identities = 183/394 (46%), Positives = 260/394 (65%)
 Frame = +3

Query: 906  LDELEVVNLGVGDEEKFTSVGADLSEEWKCKPV*FLTDNVDIFAWVIEDITGLDPEYACH 1085
            +++L+ V +   +  +   +G+ L E  K + V +L    DIFAW  ED+  +D   A H
Sbjct: 713  VEKLDEVFVNKSNPSRMVKIGSGLGETIKGELVKYLQSYADIFAWSHEDMPRIDHGIAYH 772

Query: 1086 HLHMNEGVKPVRQKMRSIRPKYAEGIREEVIRLKGAGIIREVEFTEWLSNVVAVPKKNGK 1265
             L + +G  PVRQK R    +  E I  EV +L  AG IR+ +++EW+SNV+ V K +  
Sbjct: 773  KLAIRKGAMPVRQKRRCFNQERYEAINAEVEQLLKAGFIRKTKYSEWISNVILVKKAS-- 830

Query: 1266 VRMCVDFTDVNKECPKDCYPMPRVDELVDRTAGYKVFSFMDASMGYNQVAMFGPDQEKTT 1445
             RMCVDFTD+NK CPKD +P+ ++D+LVD TAG+ + SFMD   GYNQ+ M   D+E TT
Sbjct: 831  -RMCVDFTDLNKACPKDSFPLQKIDQLVDSTAGHSLLSFMDTFSGYNQIPMDEQDEESTT 889

Query: 1446 FVFVVEGGIYCYTRMLFGLKNAGATFQRLGEKMFKGKIRRGIEIYIDDMVEKNMSEKEHL 1625
            F+  +  G++CY  M FGLKN GAT+QRL  K+FK  I   +E+Y+DDM+ K+   K+H+
Sbjct: 890  FITNI--GLFCYRVMPFGLKNTGATYQRLVNKIFKPLIGHTMEVYVDDMITKSKKPKDHV 947

Query: 1626 EGLHETFGILRKYKLKLNPEKCTFGVTSGKFLGYIVTHRGIEANP*QIGLLIEMPSPQNV 1805
            + L ETF +LRKY++KLNPEKC FGV+SGKFLG++V+HR I+ NP +I  + E+ S + V
Sbjct: 948  KHLEETFELLRKYEMKLNPEKCAFGVSSGKFLGFLVSHRRIKVNPAKIRAVTEIKSLRTV 1007

Query: 1806 KEVQRLAGRVAALNRFISKSSDKCWPLYRLLRKTPDFHWTAECEEAFQELKDYLGKAPLL 1985
            KEVQ   G++AALNRFIS+                   WT+ECEEAF +LK+YL +APLL
Sbjct: 1008 KEVQSFTGKLAALNRFISRRK---------------MEWTSECEEAFGQLKEYLARAPLL 1052

Query: 1986 SRPEQGEKLHLYLGVSEYAISSVMVRVIDKIEKP 2087
            S P +G++L+LYL +S++A SSV+VR  +  + P
Sbjct: 1053 STPREGDQLYLYLAISKWATSSVLVREYEGKQHP 1086



 Score = 99.0 bits (245), Expect(2) = e-119
 Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 12/170 (7%)
 Frame = +1

Query: 352  DLESVIFPHDDALVITIAMGNYLVKRVLIDCGSSVDLLFKGAMEEMNIGRDQLKAPQTNL 531
            D E +++ H+DALVI   +    ++R+L+D GSSVD+LFK A+++M I   +L+   T+L
Sbjct: 540  DEEGILYLHEDALVIKAMVAAIELRRILVDTGSSVDILFKSALDDMGISDLKLERTNTSL 599

Query: 532  YGFNGSMTEPMGELMLPVTAG----PTTVFTRFMVVDSSSQYNAILGRKWIHEMKAILST 699
             GF G    PMG   LP+T G       V   F+VV+  S Y  ILGR +I   + ++ST
Sbjct: 600  KGFGGGRLTPMGINELPITVGSKPFERIVMLYFVVVEERSPYQMILGRPFIRISQCVIST 659

Query: 700  FYQVVRFPTNGGTYEIRGDE--------VAAQNIHQVTVKSMAEQKERGR 825
             Y  +++  NG    ++G +         AA+   QVT        ++GR
Sbjct: 660  HYLALKYRVNGVVGVVKGVQKMTRSCYATAAKETLQVTSLDNRGDSKKGR 709


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  418 bits (1075), Expect = e-114
 Identities = 203/382 (53%), Positives = 271/382 (70%)
 Frame = +3

Query: 918  EVVNLGVGDEEKFTSVGADLSEEWKCKPV*FLTDNVDIFAWVIEDITGLDPEYACHHLHM 1097
            E+VN+   D  +   VGA++S   + + +  L  N   FAW IED+ G+DP    H L++
Sbjct: 759  EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 818

Query: 1098 NEGVKPVRQKMRSIRPKYAEGIREEVIRLKGAGIIREVEFTEWLSNVVAVPKKNGKVRMC 1277
            +   KPV+QK R + P+ A  + EEV +L  AG I EV++ EWL+N V V KKNGK R+C
Sbjct: 819  DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 878

Query: 1278 VDFTDVNKECPKDCYPMPRVDELVDRTAGYKVFSFMDASMGYNQVAMFGPDQEKTTFVFV 1457
            VD+TD+NK CPKD YP+P +D LV+ T+G  + SFMDA  GYNQ+ M   DQEKT+FV  
Sbjct: 879  VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFV-- 936

Query: 1458 VEGGIYCYTRMLFGLKNAGATFQRLGEKMFKGKIRRGIEIYIDDMVEKNMSEKEHLEGLH 1637
             + G YCY  M FGLKNAGAT+QR   KM   +I R +E+YIDDM+ K++  ++H+E L 
Sbjct: 937  TDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLS 996

Query: 1638 ETFGILRKYKLKLNPEKCTFGVTSGKFLGYIVTHRGIEANP*QIGLLIEMPSPQNVKEVQ 1817
            + F +L  Y +KLNP KCTFGVTSG+FLGY+VT RGIEANP QI  ++E+PSP+N +EVQ
Sbjct: 997  KCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQ 1056

Query: 1818 RLAGRVAALNRFISKSSDKCWPLYRLLRKTPDFHWTAECEEAFQELKDYLGKAPLLSRPE 1997
            RL GR+AALNRFIS+S+DKC P Y LL++   F W  + EEAF++LKDYL   P+L +PE
Sbjct: 1057 RLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPE 1116

Query: 1998 QGEKLHLYLGVSEYAISSVMVR 2063
             GE L+LY+ VS++A+SSV+VR
Sbjct: 1117 VGETLYLYIAVSDHAVSSVLVR 1138



 Score =  122 bits (305), Expect = 5e-25
 Identities = 61/144 (42%), Positives = 88/144 (61%)
 Frame = +1

Query: 334  IMFTPKDLESVIFPHDDALVITIAMGNYLVKRVLIDCGSSVDLLFKGAMEEMNIGRDQLK 513
            I FT  DLE +  PH+D LV+ + + +  V RVLID GSSVDL+FK  +  MNI   Q+K
Sbjct: 600  ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 659

Query: 514  APQTNLYGFNGSMTEPMGELMLPVTAGPTTVFTRFMVVDSSSQYNAILGRKWIHEMKAIL 693
                 L GF+G     +G + LP+  G    + +F+V+   + YN ILG  WIH+M+AI 
Sbjct: 660  PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIP 719

Query: 694  STFYQVVRFPTNGGTYEIRGDEVA 765
            ST++Q V+FPT+ G + +R  + A
Sbjct: 720  STYHQCVKFPTHNGIFTLRAPKEA 743


>gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
            [Sorghum bicolor]
          Length = 1877

 Score =  323 bits (828), Expect(2) = e-113
 Identities = 172/407 (42%), Positives = 253/407 (62%), Gaps = 6/407 (1%)
 Frame = +3

Query: 858  EAAETEVYEPPLGPK------TLDELEVVNLGVGDEEKFTSVGADLSEEWKCKPV*FLTD 1019
            ++ + E  +PP  P+        +E + + L     +K  ++ A LS E + + +  L  
Sbjct: 786  DSTQHEASQPPDMPRGKTNLADQEETKCIPLQEAVPDKKVTISATLSREEELELLDVLQK 845

Query: 1020 NVDIFAWVIEDITGLDPEYACHHLHMNEGVKPVRQKMRSIRPKYAEGIREEVIRLKGAGI 1199
            N DIFAW   D+ G+  +   H L ++  ++P +Q+ R +  +     + EV RL  A +
Sbjct: 846  NQDIFAWSAADLQGVSRDIIEHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKV 905

Query: 1200 IREVEFTEWLSNVVAVPKKNGKVRMCVDFTDVNKECPKDCYPMPRVDELVDRTAGYKVFS 1379
            IREV + EWL+NVV VPKKNGK+RMC+DFTD+NK C KD +P+PR+D  VD+ AG + FS
Sbjct: 906  IREVIYPEWLANVVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFS 965

Query: 1380 FMDASMGYNQVAMFGPDQEKTTFVFVVEGGIYCYTRMLFGLKNAGATFQRLGEKMFKGKI 1559
             +D   GY+Q+ +   D+ K +F      G YCYTRM  GLKNAGATF R+  K+   ++
Sbjct: 966  LLDCFSGYHQIWLKKEDEGKASFT--TPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQL 1023

Query: 1560 RRGIEIYIDDMVEKNMSEKEHLEGLHETFGILRKYKLKLNPEKCTFGVTSGKFLGYIVTH 1739
            +R I  Y+DD+V  +  +++H++ L ETF  LR   LKLNPEKC FGV+ GK LGYI++ 
Sbjct: 1024 QRNIIAYVDDVVVMSKRKEDHIKDLQETFVNLRSAGLKLNPEKCVFGVSKGKMLGYIISS 1083

Query: 1740 RGIEANP*QIGLLIEMPSPQNVKEVQRLAGRVAALNRFISKSSDKCWPLYRLLRKTPDFH 1919
             GI ANP +   ++ M  P N KEVQRL GR+AALNRFIS+S+++  P +++LR+     
Sbjct: 1084 EGIRANPDKTKAIMSMAEPSNKKEVQRLTGRIAALNRFISRSAERSLPFFKVLREGKT-E 1142

Query: 1920 WTAECEEAFQELKDYLGKAPLLSRPEQGEKLHLYLGVSEYAISSVMV 2060
            W  E  EAF++LK+Y+    L++ PE    L LY+  SE+A+S V+V
Sbjct: 1143 WGPEQSEAFRQLKNYIATNLLVTVPEPDTPLLLYVAASEHAVSGVLV 1189



 Score =  114 bits (284), Expect(2) = e-113
 Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 4/213 (1%)
 Frame = +1

Query: 172  PARILGTINVIFSGETLGRNAHREKV*KTASLQQVNEMVSVPRLVRETAMGEEGIMFTPK 351
            P   +G I  I  G ++     ++K      L+ VN  V+V   VR T      I FT +
Sbjct: 570  PLPTIGMILPIAGGSSMEFQTKKQK---KDHLRLVNN-VAVQGPVRCTDWSRTPITFTEE 625

Query: 352  DLESVIFPHDDALVITIAMGNYLVKRVLIDCGSSVDLLFKGAMEEMNIGRDQLKAPQTNL 531
            DL    +PH DALVIT  +  + V R+L+D GSS D++F G  ++M + R QL+  ++ L
Sbjct: 626  DLRLESYPHTDALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQLQPSESPL 685

Query: 532  YGFNGSMTEPMGELMLPVTAGPT----TVFTRFMVVDSSSQYNAILGRKWIHEMKAILST 699
             GF G     +G++ LPV+ G T    T +  F VVD    YNAI GR ++++  A    
Sbjct: 686  IGFGGKQIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLNKFNAAAHM 745

Query: 700  FYQVVRFPTNGGTYEIRGDEVAAQNIHQVTVKS 798
             Y  ++ P   G   + G +  A+NI +   KS
Sbjct: 746  GYLCMKIPALHGVITVHGSQKEARNIEKAIYKS 778


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  343 bits (881), Expect(2) = e-113
 Identities = 186/410 (45%), Positives = 255/410 (62%)
 Frame = +3

Query: 858  EAAETEVYEPPLGPKTLDELEVVNLGVGDEEKFTSVGADLSEEWKCKPV*FLTDNVDIFA 1037
            E AETE  E       +D    V +GVG E KF +   DL           L  N D+FA
Sbjct: 243  EGAETEQVE-------IDPGRTVTVGVGLEPKFRADLLDL-----------LRKNKDVFA 284

Query: 1038 WVIEDITGLDPEYACHHLHMNEGVKPVRQKMRSIRPKYAEGIREEVIRLKGAGIIREVEF 1217
            +   ++ G+  E   H L++    +PV+QKMR+   +  + I+ EV +L  AG I    +
Sbjct: 285  YSAAEMPGVSREVIVHKLNVLSNARPVKQKMRNSSAEKDDAIKAEVDKLLEAGFIMPCTY 344

Query: 1218 TEWLSNVVAVPKKNGKVRMCVDFTDVNKECPKDCYPMPRVDELVDRTAGYKVFSFMDASM 1397
             EWL+NVV V K +G  RMCVDFT++NK CPKDCYP+PR+D L+D TA Y + S +DA  
Sbjct: 345  PEWLANVVMVKKSSGGWRMCVDFTNLNKACPKDCYPLPRIDSLIDATASYTMLSLLDAFS 404

Query: 1398 GYNQVAMFGPDQEKTTFVFVVEGGIYCYTRMLFGLKNAGATFQRLGEKMFKGKIRRGIEI 1577
            GY+QV M   D  K  F+ +   G Y Y  M FGLKNAGAT+ RL +K+F+ +  R IE 
Sbjct: 405  GYHQVFMAEEDVLKCAFITI--HGTYMYKMMSFGLKNAGATYTRLVDKVFQDQKGRNIEA 462

Query: 1578 YIDDMVEKNMSEKEHLEGLHETFGILRKYKLKLNPEKCTFGVTSGKFLGYIVTHRGIEAN 1757
            Y+DD + K+ S+ EHL  L ETF  LRKYK+KLNP KC FGV +GKFLG +V+ RGI+AN
Sbjct: 463  YVDDAIVKSKSDSEHLADLSETFCSLRKYKMKLNPMKCNFGVRAGKFLGVLVSARGIDAN 522

Query: 1758 P*QIGLLIEMPSPQNVKEVQRLAGRVAALNRFISKSSDKCWPLYRLLRKTPDFHWTAECE 1937
            P ++  ++++  P+N KEV  L GR+AAL RFIS+S+DK  P +++L+   DF W  E  
Sbjct: 523  PEKVQAILDLLEPRNRKEVMMLTGRMAALARFISRSTDKSTPFFKVLKGNKDFSWGEEQS 582

Query: 1938 EAFQELKDYLGKAPLLSRPEQGEKLHLYLGVSEYAISSVMVRVIDKIEKP 2087
             AF++LK +L   P LSRP  GE L+LY+ V+   +S+V++R  DK + P
Sbjct: 583  TAFRQLKAHLITLPTLSRPMLGETLYLYIAVTSATVSAVIIREEDKQQHP 632



 Score = 93.2 bits (230), Expect(2) = e-113
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 17/240 (7%)
 Frame = +1

Query: 184 LGTINVIFSGETLGRNAHREKV*KTASLQQVNEMVSVPRLVRETAMGEE---GIMFTPKD 354
           +G I V+  G+    + +  K       + +NE+      V  TA+       I    KD
Sbjct: 1   MGVIQVVTGGDENRGSTNGHK-------RHLNELYQAINFVPTTAIPASTVPDITIGRKD 53

Query: 355 LESVIFPHDDALVITIAMGNYLVKRVLIDCGSSVDLLFKGAMEEMNIGRDQLKAPQTNLY 534
            E V+ PH D LV+ + + N+LVKR LID G+  +++F+     + +  + L      LY
Sbjct: 54  YEGVVAPHSDPLVVHLDISNHLVKRCLIDTGAYTNIMFRECFLNLGLKIEDLSPCTNPLY 113

Query: 535 GFNGSMTEPMGELMLPVTAGPT----TVFTRFMVVDSSSQYNAILGRKWIHEMKAILSTF 702
            F+G+   P+G + LPV  G T     V + F+V+D SS YN ++GR  + E  A++S  
Sbjct: 114 SFSGAGLVPLGSIRLPVMFGQTDAAKNVLSEFVVIDGSSAYNVLIGRVTLSEADAVMSIR 173

Query: 703 YQVVRFPTNGGTY----------EIRGDEVAAQNIHQVTVKSMAEQKERGR*PNQVQHSN 852
              + + ++ G            E+   +++A+  +  ++K +A++ E+G+ P+  Q  +
Sbjct: 174 ALTLMYVSDQGEVQKLVSKDERDEVVNVQISARGCNMQSLK-VAKKSEKGKSPSLRQEGD 232


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  407 bits (1047), Expect = e-111
 Identities = 199/382 (52%), Positives = 269/382 (70%)
 Frame = +3

Query: 942  DEEKFTSVGADLSEEWKCKPV*FLTDNVDIFAWVIEDITGLDPEYACHHLHMNEGVKPVR 1121
            D+E++ SVG+ L    + + V FL DN+D+FAW   D++G+DPE+ CHHL+++    P +
Sbjct: 36   DKERYFSVGSQLPALEREEVVQFLQDNIDVFAWTTYDVSGIDPEFICHHLNVSHNAMPRK 95

Query: 1122 QKMRSIRPKYAEGIREEVIRLKGAGIIREVEFTEWLSNVVAVPKKNGKVRMCVDFTDVNK 1301
            Q  R    ++AE ++EEV +LK AG I+E+ + EWL+N V V KKNGK R+CVDFTD+NK
Sbjct: 96   QPPRHASQEHAEAVKEEVNKLKQAGAIKEIFYPEWLANTVVVKKKNGKWRVCVDFTDLNK 155

Query: 1302 ECPKDCYPMPRVDELVDRTAGYKVFSFMDASMGYNQVAMFGPDQEKTTFVFVVEGGIYCY 1481
             CPKD +P+PR+D+LVD T  +   SF+DA   Y+Q+ M   DQEKT F      G Y Y
Sbjct: 156  ACPKDPFPIPRIDQLVDATVRHPRMSFLDAFQNYHQIPMSLNDQEKTAFR--TPNGNYHY 213

Query: 1482 TRMLFGLKNAGATFQRLGEKMFKGKIRRGIEIYIDDMVEKNMSEKEHLEGLHETFGILRK 1661
              M FGLKNAG+T+QR+  +MF  ++ R +E YIDDMV K+    +HL+ LHETF +LRK
Sbjct: 214  RVMPFGLKNAGSTYQRMVTRMFDSQLGRTMEAYIDDMVIKSKKVGDHLKDLHETFSVLRK 273

Query: 1662 YKLKLNPEKCTFGVTSGKFLGYIVTHRGIEANP*QIGLLIEMPSPQNVKEVQRLAGRVAA 1841
            +KL+LN  KC+FGV SGKFLGY++THRGIE NP QI  ++E+  P+N KEVQ+LAG  A 
Sbjct: 274  HKLRLNASKCSFGVDSGKFLGYMITHRGIEFNPDQIKAILELHPPRNPKEVQKLAGMFAV 333

Query: 1842 LNRFISKSSDKCWPLYRLLRKTPDFHWTAECEEAFQELKDYLGKAPLLSRPEQGEKLHLY 2021
            LNRFIS+S+D+C P YRLL K  DF WT EC  AF++L+ YL    +LSRPE+ E L+ Y
Sbjct: 334  LNRFISRSADRCRPFYRLLHKWKDFLWTDECNLAFEDLRQYLANPLILSRPEKKEVLYAY 393

Query: 2022 LGVSEYAISSVMVRVIDKIEKP 2087
            L V  YA+S V++R  D ++KP
Sbjct: 394  LAVMNYAVSLVLIRNDDGVQKP 415