BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017179
         (203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containi...    71   1e-10
ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|2...    70   2e-10
ref|XP_002876469.1| pentatricopeptide repeat-containing protein ...    69   5e-10
ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09
ref|NP_191418.2| pentatricopeptide repeat-containing protein [Ar...    66   3e-09

>ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g58590-like [Glycine max]
          Length = 732

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/67 (50%), Positives = 46/67 (68%)
 Frame = -3

Query: 201 DCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNEDSHTPFYLLRQMIRADYHPNEYT 22
           D Y+KC+    A   F +++  NVVSWNALI G+SN  S T   LL++M++  Y PNE++
Sbjct: 359 DFYSKCDKFISAHKCFDQIEEKNVVSWNALITGYSNICSSTSILLLQKMLQLGYSPNEFS 418

Query: 21  FSAVLKS 1
           FSAVLKS
Sbjct: 419 FSAVLKS 425


>ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|222862901|gb|EEF00408.1|
           predicted protein [Populus trichocarpa]
          Length = 737

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/67 (49%), Positives = 45/67 (67%)
 Frame = -3

Query: 201 DCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNEDSHTPFYLLRQMIRADYHPNEYT 22
           D YAKC  L+ A   F E+   NVVSWN+LI G++N+ S     LL +M++  + PNE++
Sbjct: 358 DYYAKCGKLDNAHYCFREIHQKNVVSWNSLILGYANKCSFASVSLLLEMLKLGFRPNEFS 417

Query: 21  FSAVLKS 1
           FSAVLKS
Sbjct: 418 FSAVLKS 424


>ref|XP_002876469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322307|gb|EFH52728.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 741

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 201 DCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNEDSHTPFYLLRQMIRADYHPNEYT 22
           D YAKC  LE + L F  ++  N+V WNAL++G+SN+D      L  QM++  + P EYT
Sbjct: 359 DFYAKCGSLEDSHLCFDYIRDKNIVCWNALLSGYSNKDGPICLSLFLQMLQMGFRPTEYT 418

Query: 21  FSAVLKS 1
           FS  LKS
Sbjct: 419 FSTTLKS 425


>ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g58590-like [Vitis vinifera]
          Length = 921

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 34/67 (50%), Positives = 45/67 (67%)
 Frame = -3

Query: 201 DCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNEDSHTPFYLLRQMIRADYHPNEYT 22
           D YAKC+ LE A   F E+   NVV WNALI G+SN+   +   LL++M++  Y PNE++
Sbjct: 398 DFYAKCDNLESAHCCFDEIDEKNVVCWNALILGYSNK-CFSSVSLLKRMLQLGYCPNEFS 456

Query: 21  FSAVLKS 1
           FSA LKS
Sbjct: 457 FSAALKS 463


>ref|NP_191418.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218525906|sp|Q0WN01.2|PP286_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g58590 gi|332646281|gb|AEE79802.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/67 (44%), Positives = 42/67 (62%)
 Frame = -3

Query: 201 DCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNEDSHTPFYLLRQMIRADYHPNEYT 22
           D YAKC  LE + L F  ++  N+V WNAL++G++N+D      L  QM++  + P EYT
Sbjct: 359 DFYAKCGNLEDSRLCFDYIRDKNIVCWNALLSGYANKDGPICLSLFLQMLQMGFRPTEYT 418

Query: 21  FSAVLKS 1
           FS  LKS
Sbjct: 419 FSTALKS 425