BLASTX nr result
ID: Coptis24_contig00016962
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00016962
(1168 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 205 2e-50
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 203 8e-50
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 192 1e-46
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 179 2e-42
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 178 2e-42
>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 205 bits (522), Expect = 2e-50
Identities = 111/346 (32%), Positives = 174/346 (50%), Gaps = 4/346 (1%)
Frame = -1
Query: 1075 LVSSRLSIRDCLPLIEKVTGRITNWKSNYLCHAGRLQLIQSILSSFHSYWARTFFLPKSV 896
L+SSRL C L++++T ++ +W L +AGR+QLI S+L S YWA F LP V
Sbjct: 63 LLSSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQV 122
Query: 895 LLQISKVCIKFLWCGTQMVNKVH*TNRANLLYTKQEGGLGIVDPIIWNIGALCGLVFKLA 716
+ + ++ FLW G+ M + K+EGGLGI WN AL ++ L
Sbjct: 123 IKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLC 182
Query: 715 R-KENNLWNKWIWNEQIKSKFFWTMNIPSNCSWSWRSILNHRKYAQRFTRYIIAKGCQTY 539
+ ++W+ WI + ++ + FWT+ P NCSW+W IL R A +YII G T
Sbjct: 183 NDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTS 242
Query: 538 IWHDIWCDDLPLHTNSAARTLIN--LPDDARIFELVDQGRWND-IIRNLPEGPLKNSILS 368
+W D W PL + R + + + +A++ L+ W + + P+ +I S
Sbjct: 243 LWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPS 302
Query: 367 TDIFNELSEDQIIWTPTTSGDFSSKSAYDGFRRTRAKVPWYSLVWGKLVLPKFSFNAWQL 188
+D+++W + + FS K A++ RR R V W+ +VW K +P+ SF W
Sbjct: 303 NSNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMA 362
Query: 187 FSGSLPTQDKLVYKKVLPSSSCCFCQGHKENSKHLFFDCLYSKEVW 50
L TQDKL + + C C + E+ HLFF+C Y+K +W
Sbjct: 363 VQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIW 408
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 203 bits (516), Expect = 8e-50
Identities = 117/351 (33%), Positives = 183/351 (52%), Gaps = 9/351 (2%)
Frame = -1
Query: 1075 LVSSRLSIRDCLPLIEKVTGRITNWKSNYLCHAGRLQLIQSILSSFHSYWARTFFLPKSV 896
L++ RLS DCLPL+E+V RI +W S +L +AGRL LI S+L S ++W F LP+
Sbjct: 776 LITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKC 835
Query: 895 LLQISKVCIKFLWCGTQMVNKVH*TNRANLLYTKQEGGLGIVDPIIWNIGALCGLVFKLA 716
+ ++ K+C FLW GT+M + + + K EGGLG+ N LV+K+
Sbjct: 836 IRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIV 895
Query: 715 RKENNLWNKWIWNEQIKSKFFWTM-NIPSNCSWSWRSILNHRKYAQRFTRYIIAKGCQTY 539
N+LW KW+ +++ FW + S SW W+ +L +R+ A+ ++ + G QT
Sbjct: 896 SHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTS 955
Query: 538 IWHDIWCDDLPLHTNSAARTLINLPDDARI-----FELVDQGRWNDIIRNLPEGPLKNSI 374
W+D W D L + R LI+L R+ + Q R + + N+ E LK
Sbjct: 956 FWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKK-- 1013
Query: 373 LSTDIFNELSEDQIIW---TPTTSGDFSSKSAYDGFRRTRAKVPWYSLVWGKLVLPKFSF 203
S D E +ED+++W + FS++ + R T A+VPW+ ++W PK+SF
Sbjct: 1014 -SWDTRTE-TEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSF 1071
Query: 202 NAWQLFSGSLPTQDKLVYKKVLPSSSCCFCQGHKENSKHLFFDCLYSKEVW 50
+W G LPT D+++ ++ C FCQG E HLFF C ++ +W
Sbjct: 1072 CSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIW 1122
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 192 bits (489), Expect = 1e-46
Identities = 116/350 (33%), Positives = 171/350 (48%), Gaps = 8/350 (2%)
Frame = -1
Query: 1075 LVSSRLSIRDCLPLIEKVTGRITNWKSNYLCHAGRLQLIQSILSSFHSYWARTFFLPKSV 896
L++ R++ D LPL+EK+ RIT+W + +L AGRLQLI+S+LSS ++W F LPK+
Sbjct: 923 LLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKAC 982
Query: 895 LLQISKVCIKFLWCGTQMVNKVH*TNRANLLYTKQEGGLGIVDPIIWNIGALCGLVFKLA 716
L +I K+ FLW G + K + + K+EGGLG+ N +L L++++
Sbjct: 983 LQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRIL 1042
Query: 715 RKENNLWNKWIWNEQIKSKFFWTMNIPSNC-SWSWRSILNHRKYAQRFTRYIIAKGCQTY 539
++LW KW+ I+ + FW++ + SW WR IL R A+ F R + G T
Sbjct: 1043 SARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTS 1102
Query: 538 IWHDIWCDDLPLHTNSAARTLINL--PDDARIFELVDQGRWNDIIRNLPE--GPLKNSIL 371
WHD WC LH + +R I+L P++A + E+++ R R+ + +K+ I
Sbjct: 1103 FWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRK---RHRADFLNQIKSQIE 1159
Query: 370 STDIFNELSEDQIIW---TPTTSGDFSSKSAYDGFRRTRAKVPWYSLVWGKLVLPKFSFN 200
D+ +W T FSS + R + WY VW PK+SF
Sbjct: 1160 LARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPKYSFV 1219
Query: 199 AWQLFSGSLPTQDKLVYKKVLPSSSCCFCQGHKENSKHLFFDCLYSKEVW 50
W F L T DK+ C FC E HLFF C YS VW
Sbjct: 1220 TWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVW 1269
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 179 bits (453), Expect = 2e-42
Identities = 106/368 (28%), Positives = 169/368 (45%), Gaps = 12/368 (3%)
Frame = -1
Query: 1075 LVSSRLSIRDCLPLIEKVTGRITNWKSNYLCHAGRLQLIQSILSSFHSYWARTFFLPKSV 896
L+ +L I D PL+EK++ R+ +W S L AGR QLI S++ ++W TF LPK
Sbjct: 629 LMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGC 688
Query: 895 LLQISKVCIKFLWCGTQMVNKVH*TNRANLLYTKQEGGLGIVDPIIWNIGALCGLVFKLA 716
+ +I +C KFLW G+ K + + K EGGLG WN L L++ L
Sbjct: 689 IKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLF 748
Query: 715 RKENNLWNKWIWNEQIKSKFFWTMNIPSNCSWSWRSILNHRKYAQRFTRYIIAKGCQTYI 536
++ +LW +W + ++ FW +N W+W+ +LN R A++F + + G
Sbjct: 749 DRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSF 808
Query: 535 WHDIWCDDLPL--HTNSAARTLINLPDDARIFELVDQGRW----------NDIIRNLPEG 392
W D W PL + + +P A++ + +D W + I+ +L
Sbjct: 809 WFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASL 868
Query: 391 PLKNSILSTDIFNELSEDQIIWTPTTSGDFSSKSAYDGFRRTRAKVPWYSLVWGKLVLPK 212
P + ++ +D ++ +D FS+ ++ R R W VW K +PK
Sbjct: 869 PPPSPLMVSDSYSWCVDD------VDCQGFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPK 922
Query: 211 FSFNAWQLFSGSLPTQDKLVYKKVLPSSSCCFCQGHKENSKHLFFDCLYSKEVWTRVKLL 32
+FN W LPT+ +LV ++ S+ CC C E HL C +S +VW V L
Sbjct: 923 HAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMVFLR 982
Query: 31 LVSMQMSL 8
L Q L
Sbjct: 983 LCPRQRLL 990
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 178 bits (452), Expect = 2e-42
Identities = 106/368 (28%), Positives = 169/368 (45%), Gaps = 12/368 (3%)
Frame = -1
Query: 1075 LVSSRLSIRDCLPLIEKVTGRITNWKSNYLCHAGRLQLIQSILSSFHSYWARTFFLPKSV 896
L+ +L I D PL+EK++ R+ +W S L AGR QLI S++ ++W TF LPK
Sbjct: 629 LMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGC 688
Query: 895 LLQISKVCIKFLWCGTQMVNKVH*TNRANLLYTKQEGGLGIVDPIIWNIGALCGLVFKLA 716
+ +I +C KFLW G+ K + + K EGGLG WN L L++ L
Sbjct: 689 IKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLF 748
Query: 715 RKENNLWNKWIWNEQIKSKFFWTMNIPSNCSWSWRSILNHRKYAQRFTRYIIAKGCQTYI 536
++ +LW +W + ++ FW +N W+W+ +LN R A++F + + G
Sbjct: 749 DRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSF 808
Query: 535 WHDIWCDDLPL--HTNSAARTLINLPDDARIFELVDQGRW----------NDIIRNLPEG 392
W D W PL + + +P A++ + +D W + I+ +L
Sbjct: 809 WFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASL 868
Query: 391 PLKNSILSTDIFNELSEDQIIWTPTTSGDFSSKSAYDGFRRTRAKVPWYSLVWGKLVLPK 212
P + ++ +D ++ +D FS+ ++ R R W VW K +PK
Sbjct: 869 PPPSPLMVSDSYSWCVDD------VDCQGFSAAKTWEVLRPRRPVKRWARSVWFKGAVPK 922
Query: 211 FSFNAWQLFSGSLPTQDKLVYKKVLPSSSCCFCQGHKENSKHLFFDCLYSKEVWTRVKLL 32
+FN W LPT+ +LV ++ S+ CC C E HL C +S +VW V L
Sbjct: 923 HAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMVFLR 982
Query: 31 LVSMQMSL 8
L Q L
Sbjct: 983 LCPRQRLL 990