BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016877
         (549 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35839.3| unnamed protein product [Vitis vinifera]              139   3e-31
ref|XP_003627350.1| Nuclear pore complex protein Nup107 [Medicag...   136   2e-30
ref|XP_002331185.1| predicted protein [Populus trichocarpa] gi|2...   131   6e-29
ref|XP_003528609.1| PREDICTED: nuclear pore complex protein Nup1...   130   1e-28
ref|NP_850581.1| uncharacterized protein [Arabidopsis thaliana] ...   120   1e-25

>emb|CBI35839.3| unnamed protein product [Vitis vinifera]
          Length = 222

 Score =  139 bits (350), Expect = 3e-31
 Identities = 96/198 (48%), Positives = 115/198 (58%), Gaps = 35/198 (17%)
 Frame = -2

Query: 491 SSQTTFDPQDLTTREQFRRYGKRHXXXXXXXXXXXXXSK-----ILFDGNNNIEIRPNAA 327
           +S + FDP+DL+ RE++RRYGKR              SK     +LFDG + I+ +PNAA
Sbjct: 7   TSPSYFDPEDLSIREKYRRYGKRQSGSSISPYQENSVSKYSGTRLLFDGQS-IQRQPNAA 65

Query: 326 LFLEDIKLEVEXXXXXXXXXXXXXXXS---RIATIPTK--VDYDDGVDS----------- 195
           LFLEDIKLEVE               S   R  +I +    + D G+DS           
Sbjct: 66  LFLEDIKLEVESFEADHSEGTPARAQSASKRRLSIDSHGISEVDAGIDSVRRVGSHSLKS 125

Query: 194 --------------TFGLFASLLDSAIQGLMSIPELILQFETACRNVSESIKYGSNGRHR 57
                         TF LFASLLDSA+QGL+SIP+LILQFET+ RNVSESI+YGS   HR
Sbjct: 126 CKHEDDLLADAGETTFALFASLLDSALQGLLSIPDLILQFETSSRNVSESIRYGSTTWHR 185

Query: 56  VVEDKLMRQKARLLLDEA 3
           VVEDKLMRQKA LLLDEA
Sbjct: 186 VVEDKLMRQKALLLLDEA 203


>ref|XP_003627350.1| Nuclear pore complex protein Nup107 [Medicago truncatula]
           gi|355521372|gb|AET01826.1| Nuclear pore complex protein
           Nup107 [Medicago truncatula]
          Length = 599

 Score =  136 bits (343), Expect = 2e-30
 Identities = 88/185 (47%), Positives = 101/185 (54%), Gaps = 27/185 (14%)
 Frame = -2

Query: 476 FDPQDLTTREQFRRYGKRHXXXXXXXXXXXXXSKI----LFDGNNNIEIRPNAALFLEDI 309
           FDPQDLTTRE+FRRYGKRH             SK+    LF    NI    NAAL LE+I
Sbjct: 12  FDPQDLTTREKFRRYGKRHLNSGASVEQDYSASKLSESGLFYDGQNIHSPTNAALILENI 71

Query: 308 KLEVEXXXXXXXXXXXXXXXSR--IATIPTKVDYDDGVDST------------------- 192
           K EVE                +   A +P     DDG DS                    
Sbjct: 72  KQEVESLDADYLDDKSLYSSRKRSSADVPGIPGMDDGFDSVRYSLKACKQEGDSLGDDAD 131

Query: 191 --FGLFASLLDSAIQGLMSIPELILQFETACRNVSESIKYGSNGRHRVVEDKLMRQKARL 18
             F  FASL D+++ G+M IP+LIL+FE  CRNVSESI+YG N RHRVVEDKLMRQKA+L
Sbjct: 132 NIFNSFASLFDTSLTGMMPIPDLILRFENECRNVSESIRYGLNIRHRVVEDKLMRQKAQL 191

Query: 17  LLDEA 3
           LLDEA
Sbjct: 192 LLDEA 196


>ref|XP_002331185.1| predicted protein [Populus trichocarpa] gi|222873306|gb|EEF10437.1|
           predicted protein [Populus trichocarpa]
          Length = 1096

 Score =  131 bits (330), Expect = 6e-29
 Identities = 90/200 (45%), Positives = 111/200 (55%), Gaps = 38/200 (19%)
 Frame = -2

Query: 488 SQTTFDPQDLTTREQFRRYGKRHXXXXXXXXXXXXXSK-----ILFDGNNNIEIRPNAAL 324
           S + FDP+DLT REQFRRYGKRH             SK     +L+DGNN I    NAAL
Sbjct: 4   SNSYFDPEDLTIREQFRRYGKRHSISSVSPHQDGPVSKFSESRLLYDGNN-IHSPTNAAL 62

Query: 323 FLEDIKLEVEXXXXXXXXXXXXXXXSRIA-----TIPTKVDYDD---GVDS--------- 195
            LE+IK EV+               ++ A     ++ ++  + +   G+DS         
Sbjct: 63  ILENIKQEVDSIETYHFEGATTPARNQSAIKRRSSVDSRGGFSEADLGIDSGARFGSQSL 122

Query: 194 ----------------TFGLFASLLDSAIQGLMSIPELILQFETACRNVSESIKYGSNGR 63
                           TFGLFASL DSAIQGLM I +LIL+FE +CR+VSESI+YG N  
Sbjct: 123 KACKIEDETLTDSGETTFGLFASLFDSAIQGLMPIRDLILRFEKSCRDVSESIRYGPNIW 182

Query: 62  HRVVEDKLMRQKARLLLDEA 3
           HRVVEDKLMRQKA+ LLDEA
Sbjct: 183 HRVVEDKLMRQKAQFLLDEA 202


>ref|XP_003528609.1| PREDICTED: nuclear pore complex protein Nup107-like [Glycine max]
          Length = 1080

 Score =  130 bits (328), Expect = 1e-28
 Identities = 89/191 (46%), Positives = 109/191 (57%), Gaps = 28/191 (14%)
 Frame = -2

Query: 491 SSQTTFDPQDLTTREQFRRYGKRHXXXXXXXXXXXXXSKI-----LFDGNNNIEIRPNAA 327
           +S + FDP +L++R+QFRRYGKRH             SK+     L+DG + I    NAA
Sbjct: 9   TSPSYFDPHNLSSRQQFRRYGKRHSSSGASIQYDNSASKLSETGLLYDGQS-IHSPTNAA 67

Query: 326 LFLEDIKLEVEXXXXXXXXXXXXXXXSR-----IATIP---------------TKVDYD- 210
           L LE+IK EVE                R     I  +P                K + D 
Sbjct: 68  LVLENIKQEVESLDADYLEEKTPYSTRRKLSAVIDGVPGVDAGFDSGRYSLKACKTEGDS 127

Query: 209 --DGVDSTFGLFASLLDSAIQGLMSIPELILQFETACRNVSESIKYGSNGRHRVVEDKLM 36
             DG ++ F LFASLLDS++QGLM I +LIL+ E ACRNVSESI+YG N RHRVVEDKLM
Sbjct: 128 LGDGAETIFTLFASLLDSSLQGLMPIADLILRVENACRNVSESIRYGLNIRHRVVEDKLM 187

Query: 35  RQKARLLLDEA 3
           RQKA+LLLDEA
Sbjct: 188 RQKAQLLLDEA 198


>ref|NP_850581.1| uncharacterized protein [Arabidopsis thaliana]
           gi|332641952|gb|AEE75473.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 1077

 Score =  120 bits (302), Expect = 1e-25
 Identities = 82/190 (43%), Positives = 106/190 (55%), Gaps = 27/190 (14%)
 Frame = -2

Query: 491 SSQTTFDPQDLTTREQFRRYGKRHXXXXXXXXXXXXXS--KILFDGNNNIEIRPNAALFL 318
           +S + FDP+ L+ R+QFRRY KRH             S  ++L+DG+N I    N AL L
Sbjct: 7   TSPSYFDPEALSVRDQFRRYRKRHSTSPHEEMLSSNVSENRLLYDGHN-IHSPTNTALLL 65

Query: 317 EDIKLEVEXXXXXXXXXXXXXXXS--RIATIPTKVDYDDGV------------------- 201
           E+IK EV+               S  R  ++    D D+ +                   
Sbjct: 66  ENIKEEVDNFHTDHYEGTPTNPISASRRESVGILNDDDEALFRRVESQSLKACKIENDEL 125

Query: 200 ----DSTFGLFASLLDSAIQGLMSIPELILQFETACRNVSESIKYGSNGRHRVVEDKLMR 33
               D+TF LFASL DSA+QGLMSIP L+L+ E +CRNVS+SI+YGS+ RHR VEDKLMR
Sbjct: 126 AESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSIRYGSDIRHRAVEDKLMR 185

Query: 32  QKARLLLDEA 3
           QKA+LLL EA
Sbjct: 186 QKAQLLLGEA 195