BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016746
         (1344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   150   7e-34
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...   143   1e-31
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...   139   2e-30
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...   135   2e-29
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...   134   7e-29

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
            gi|222854763|gb|EEE92310.1| f-box family protein [Populus
            trichocarpa]
          Length = 396

 Score =  150 bits (379), Expect = 7e-34
 Identities = 121/385 (31%), Positives = 190/385 (49%), Gaps = 15/385 (3%)
 Frame = -2

Query: 1334 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISDPSF---QLNRAANTDPDLILHCK 1164
            M  LP E++ +IL RLP K L+  R V K WC +I  P+F    L  + +T  +L +  +
Sbjct: 1    MSGLPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIILR 60

Query: 1163 PLCQRNKIFFAEKNHQTIILKPKIIDVSL-FDSMSLSYEINIMGSCNGLLCLSKRGNKRR 987
                 + + F     Q ++L   +    L    M  ++ I ++GS NGLLC+S   N   
Sbjct: 61   TTSHVHYMDF----EQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCIS---NVVD 113

Query: 986  NINIFNPITGEHQQLPHCTLPNNCKR------ITKYMSGFGYDVSMQQFKMVLLLFYRPF 825
            +I ++NP T +H+ +P   LP   KR       + Y+ GFGYD     +K+V +  +   
Sbjct: 114  DIAVWNPSTRKHRVVPF--LPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGG 171

Query: 824  KSINVQKEVQVYTLGSKDWRRKIGNVPNLSFPNYYFPKYYVHVSFVFANGSLHWIAIDNT 645
               + + EV+VY+L  + WRR IG++P        +  +Y   + VFANG+LHW+  +N 
Sbjct: 172  GKRSFESEVKVYSLRKQSWRR-IGDMP--------YCVHYPGANGVFANGALHWVVGENP 222

Query: 644  SSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXXXXXXXXXXXXRQYVDA 465
             SN  + +V+  LGVE++     P+   +N      Y  LGV             + VD 
Sbjct: 223  ESNVANIVVALDLGVEDYREVLQPEYKDKNF-----YIDLGVLRGCLCFLANFLGERVDV 277

Query: 464  WVTKDCDGKTSWNKLFSVR--DPLVSHRLVRPIQVLKNG-EILLTRAFPCLVAYNTNSKE 294
            W+ K+   K SW KLFSV   + +   R ++P+   K+G E+L+      L  Y+   K+
Sbjct: 278  WMMKEYGVKESWTKLFSVAQYEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYDLKRKQ 337

Query: 293  F--RLIEVPLGSFEPIPFVATLISV 225
               R+  +P  SFE   FV +LISV
Sbjct: 338  VKNRIPGIPY-SFEADTFVESLISV 361


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
            gi|222843314|gb|EEE80861.1| f-box family protein [Populus
            trichocarpa]
          Length = 408

 Score =  143 bits (360), Expect = 1e-31
 Identities = 120/384 (31%), Positives = 178/384 (46%), Gaps = 31/384 (8%)
 Frame = -2

Query: 1334 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISDPS----FQLNRAANTDPDLILHC 1167
            M+ LP EI  DILSRLPI  LV  +CVC+ W  +  DP     +       TDP +ILHC
Sbjct: 25   MELLPREIAQDILSRLPITSLVKFKCVCRAWRAMALDPEVVNLYLSCSTQETDPCVILHC 84

Query: 1166 KPLCQRNKIFFAEKNHQTIILKPKIIDVSLFDSMSLSYEINIMGSCNGLLCLSKRGNKRR 987
                + N  F     H+    K K I    F SM   +E  ++GSCNGLLCLS       
Sbjct: 85   DFPIRNNLYFVDFAAHEEEKEKVKRIRAP-FSSMMPEFE--VVGSCNGLLCLSD-SLFND 140

Query: 986  NINIFNPITGEHQQLP-HCTLPNNCKRITKYMSGFGYDVSMQQFKMVLLLFY-------- 834
            ++ I+NP TG +++LP     P+      + + GFG++    ++K++ +++Y        
Sbjct: 141  SLYIYNPFTGRYKELPKSLQYPDQ-----EVVFGFGFNPKTNEYKVIRIVYYRNGHGRYP 195

Query: 833  RPFKSINVQKEVQVYTLGSKDWRRKIGNVPNLSFPNYYFPKYYVHVSFVFANGSLHWIAI 654
            R  + I    +VQ+ TLG   W R +G V      +Y   +     S    NG LHW++ 
Sbjct: 196  RSRRIIYPLSQVQILTLGCPGW-RSLGKV------SYRLVR---RASETLVNGRLHWVS- 244

Query: 653  DNTSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXXXXXXXXXXXXRQY 474
                + P  R+VSF L  E+F   P PD  G N  D    + L V               
Sbjct: 245  RPCRNKPARRLVSFDLTDEQFREVPKPDCGGLNRCD----YHLAVLRGCLSVAVYCNYGR 300

Query: 473  VDAWVTKDCDGKTSWNKLFSVRDPL---VSHRLVRPIQ---------------VLKNGEI 348
            ++ WV K+ + K SW K +++   +   +   LVRP++               VLKNGEI
Sbjct: 301  LEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNGEI 360

Query: 347  LLTRAFPCLVAYNTNSKEFRLIEV 276
            LL      LV+Y+    +F+ I++
Sbjct: 361  LLEYKNRALVSYDPKKGKFKDIDL 384


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
            gi|222861279|gb|EEE98821.1| f-box family protein [Populus
            trichocarpa]
          Length = 422

 Score =  139 bits (349), Expect = 2e-30
 Identities = 121/385 (31%), Positives = 181/385 (47%), Gaps = 32/385 (8%)
 Frame = -2

Query: 1334 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISDPSF-QLNRAANTD----PDLILH 1170
            M+ LP EI  DILSRLPI  LV  +CVC+ W  ++ DP    L  + +T     P LILH
Sbjct: 25   MELLPREIAHDILSRLPITSLVQFKCVCRAWRALVQDPQLVDLYLSCSTQDTDHPCLILH 84

Query: 1169 CKPLCQRNKIFFAEKNHQTIILKPKIIDVSLFDSMSLSYEINIMGSCNGLLCLSKRGNKR 990
            C    + N  F     H+    K K I    F SM   +E  ++GSCNGLLCLS      
Sbjct: 85   CDFPIRNNLYFVDFAAHEEEKEKVKRIPAP-FSSMMPEFE--VVGSCNGLLCLSD-SLYN 140

Query: 989  RNINIFNPITGEHQQLP-HCTLPNNCKRITKYMSGFGYDVSMQQFKMVLLLFY------- 834
             ++ I+NP TG +++LP     P+      + +SGFG++   +++K++ +++Y       
Sbjct: 141  DSLYIYNPFTGCYKELPKSLQYPDQ-----EVVSGFGFNPKTKEYKVIRIVYYRNGHGGY 195

Query: 833  -RPFKSINVQKEVQVYTLGSKDWRRKIGNVPNLSFPNYYFPKYYVHVSFVFANGSLHWIA 657
             R  + I    EVQ+ TLG  +W R +G V      +Y   +     S    NG LHWI+
Sbjct: 196  PRSRRIIYPLSEVQILTLGCPEW-RSLGKV------SYRLVR---RASGALVNGRLHWIS 245

Query: 656  IDNTSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXXXXXXXXXXXXRQ 477
                 + P  R+VSF L  E+F     PD  G N  +    + L V              
Sbjct: 246  -RPCRNKPARRLVSFDLTDEQFREVSKPDCGGLNRCN----YHLVVLRGCLSAAVYCNYG 300

Query: 476  YVDAWVTKDCDGKTSWNKLFSVRDPL------------------VSHRLVRPIQVLKNGE 351
             ++ WV K+ + K SW K +++   +                   + R+V  + VLKNGE
Sbjct: 301  RLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVGALCVLKNGE 360

Query: 350  ILLTRAFPCLVAYNTNSKEFRLIEV 276
            ILL      LV+Y+  + +F+ IE+
Sbjct: 361  ILLEYKNRVLVSYDPKNGKFKDIEL 385


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
            gi|147785390|emb|CAN68678.1| hypothetical protein
            VITISV_041941 [Vitis vinifera]
          Length = 409

 Score =  135 bits (340), Expect = 2e-29
 Identities = 127/384 (33%), Positives = 180/384 (46%), Gaps = 35/384 (9%)
 Frame = -2

Query: 1334 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISD---PSFQLNRAANTDPDLILHCK 1164
            M+RLP +I+ DILSRLP+  LV  R VC+ W  +  D    S  L R A  +P LILHC 
Sbjct: 27   MERLPRDIILDILSRLPVTSLVQFRFVCRGWRLMAQDSLLASKHLCRTAQYNPCLILHCD 86

Query: 1163 -PLCQRNKIFF----AEKNHQTIILKPKIIDVSLFDSMSLSYEINIMGSCNGLLCLSKRG 999
             P+  RN+I F    AE   + ++ K   + +  + SM    E  ++GSCNGLLCL+   
Sbjct: 87   YPI--RNQISFVDISAESRDKDMVRK---LTIPFWASMP---EFEVVGSCNGLLCLADSL 138

Query: 998  NKRRNINIFNPITGEHQQLP-HCTLPNNCKRITKYMSGFGYDVSMQQFKMVLLLFYR--- 831
             K   + + NP T + +QLP     P+      + + GFGY    + +K+V +++YR   
Sbjct: 139  FKDA-VYVHNPFTRDFKQLPKSLQYPDQ-----EVVFGFGYHPMTEVYKVVKVVYYRNGY 192

Query: 830  ----PFKSINV-QKEVQVYTLGSKDWRRKIGNVPNLSFPNYYFPKYYVHVSFVFANGSLH 666
                 F+ I   Q EVQV TLGS  W R +G V      +Y   ++    S    NG LH
Sbjct: 193  GGFSRFRRITCSQSEVQVLTLGSPTW-RSLGKV------SYQLDRW---PSEALVNGRLH 242

Query: 665  WIAIDNTSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXXXXXXXXXXX 486
            W+            IVSF L  E+F   P PD  G +  +    + L V           
Sbjct: 243  WVT--RPRRYVTRFIVSFDLADEQFREIPKPDCGGLSRCN----YHLLVLGGCLSAAVHR 296

Query: 485  XRQYVDAWVTKDCDGKTSWNKLFSV---------RDPLVSHRL---------VRPIQVLK 360
                ++ WV K+ D K SW K F++         +D    HR+         VR + +LK
Sbjct: 297  SNGKLEVWVMKEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLLCLLK 356

Query: 359  NGEILLTRAFPCLVAYNTNSKEFR 288
            NGEILL      LV+YN    +F+
Sbjct: 357  NGEILLEYKGRVLVSYNPERGKFK 380


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 389

 Score =  134 bits (336), Expect = 7e-29
 Identities = 108/359 (30%), Positives = 170/359 (47%), Gaps = 12/359 (3%)
 Frame = -2

Query: 1334 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISDPSF---QLNRAANTDPDLILHCK 1164
            M  LP E++ +IL RL  K L+  RCV K W T+I  P+F    LN +  +  +L +  K
Sbjct: 1    MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILK 60

Query: 1163 PLCQRNKIFFAEKNHQTIILKPKIIDVSLFDSMSLSYEINIMGSCNGLLCLSKRGNKRRN 984
                 +  F    N Q +       D  L   M  ++ + I+GSCNGLLC+    N   +
Sbjct: 61   SSELYSLSFDLLDNIQPL-------DHPL---MCYNHGVKILGSCNGLLCIC---NIVDD 107

Query: 983  INIFNPITGEHQQLPHCTLPNNCKRITKYMS------GFGYDVSMQQFKMVLLLFYRPFK 822
            I ++NP    H+ +P+  LP   KR     S      GFGYD+S   +K+V +  +    
Sbjct: 108  IALWNPSIRAHRVVPY--LPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVD 165

Query: 821  SINVQKEVQVYTLGSKDWRRKIGNVPNLSFPNYYFPKYYVHVSFVFANGSLHWIAIDNTS 642
              + + EV+V++L    WRR I ++P        +   Y   + ++ANG+LHW+   +  
Sbjct: 166  RKSFESEVKVFSLRKNSWRR-IADMP--------YCVLYPGENGIYANGALHWLVSQDPD 216

Query: 641  SNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXXXXXXXXXXXXRQYVDAW 462
            S     IV+  LGVE++ V P P+ +  N +       +GV             + VD W
Sbjct: 217  STVADTIVALDLGVEDYHVVPKPEFVDMNCN-----MGVGVLQGCLSLLAYARSERVDVW 271

Query: 461  VTKDCDGKTSWNKLFSVR--DPLVSHRLVRPIQVLKNG-EILLTRAFPCLVAYNTNSKE 294
            V ++   K SW+KLFSV   + +   R ++P+   K+G E+L+      L  Y+   KE
Sbjct: 272  VMEEYMVKESWSKLFSVARLEVIGILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLKRKE 330