BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016705
         (662 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   108   7e-22
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    91   2e-16
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      90   4e-16
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                   89   6e-16
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    89   6e-16

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  108 bits (271), Expect = 7e-22
 Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
 Frame = +2

Query: 2    FLGFANGVKGYRLWCLEDHKFLVSRDVTFDETSVLSFSKPEVAGQNGESIEVQATELEL- 178
            F+GF+ GVKGYRLWCLE  K ++SRDVTFDE+++L    PE A    + +E    ++E  
Sbjct: 663  FMGFSPGVKGYRLWCLEAKKTIISRDVTFDESAMLKKVNPEGADSTPQQVECARKQVEFE 722

Query: 179  -------------SDAADDWLDHDEVPNHGTTXXXXXXXXHPQLVVADPRPQRQVKEVHK 319
                         S  A++  D +EVP   +              +A  R +R +++  +
Sbjct: 723  PKVVIPTRNTTSDSAMAEEESDEEEVPTQES--------QQQSAPIAVRRQRRDIQKPSR 774

Query: 320  YGHEKPVKHYGQVDLVAYALNIEDDEPDSFKEAVRDAHYRDWLVAMQKMVEARDKFCTWE 499
            +           +D+VAYAL + DD P ++ EA+  +   +W  AM++ +++  K  TW+
Sbjct: 775  F-----------MDMVAYALPVVDDIPSTYPEAIMSSESGNWAGAMEEEMQSLKKNKTWK 823

Query: 500  FVSLPKGKRVLGC 538
               LPKGK+ +GC
Sbjct: 824  LAQLPKGKKAIGC 836


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 11/190 (5%)
 Frame = +2

Query: 2    FLGFANGVKGYRLWCLEDHKFLVSRDVTFDETSVLSFSKP--EVAGQNGESIEVQATELE 175
            FLG+ +GVKGY+LWC E  K ++SR+V F E SV+   KP   V  ++ E   VQ   L 
Sbjct: 891  FLGYPSGVKGYKLWCPETKKVVISRNVVFHE-SVMLHDKPSTNVPVESQEKASVQVEHLI 949

Query: 176  LSDAA----DDWLDHDEVPNHGTTXXXXXXXXHPQLVVADPRPQRQVKEVHKYGHEKPVK 343
             S  A    D  ++ DE     +          P+  +A  RP+R +K         P +
Sbjct: 950  SSGHAPEKEDVAINQDEPVIEDSN--SSIVQQSPKRSIAKDRPKRNIK--------PPQR 999

Query: 344  HYGQVDLVAYALNIEDD-----EPDSFKEAVRDAHYRDWLVAMQKMVEARDKFCTWEFVS 508
            +  + ++VAYAL++ ++     EP ++ EA+       W+ AM   +E+ +K  TWE V 
Sbjct: 1000 YIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVK 1059

Query: 509  LPKGKRVLGC 538
            LPK K+ + C
Sbjct: 1060 LPKEKKPIRC 1069


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
 Frame = +2

Query: 2    FLGFANGVKGYRLWCLEDHKFLVSRDVTFDETSVLSFSKP--EVAGQNGESIEVQATELE 175
            FLG+A+GVKGY+LWC E  K ++SR+V F E SV+   KP   V  ++ E   VQ   L 
Sbjct: 656  FLGYASGVKGYKLWCPETKKVVISRNVVFHE-SVILHDKPSTNVPVESQEKASVQVEHLI 714

Query: 176  LSDAADDWLDHDEVPNHGTTXXXXXXXXH--PQLVVADPRPQRQVKEVHKYGHEKPVKHY 349
             S  A +  D     +            H  P+  +A  +P+R +K   +Y  E      
Sbjct: 715  SSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEE------ 768

Query: 350  GQVDLVAYALNIEDD-----EPDSFKEAVRDAHYRDWLVAMQKMVEARDKFCTWEFVSLP 514
                +VAYAL++ +      EP ++ EA+       W+ AM   +E+ +K  TWE V LP
Sbjct: 769  --AKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLP 826

Query: 515  KGKRVLGC 538
            K K+ + C
Sbjct: 827  KEKKPIRC 834


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score = 89.4 bits (220), Expect = 6e-16
 Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 1/179 (0%)
 Frame = +2

Query: 2    FLGFANGVKGYRLWCLEDHKFLVSRDVTFDETSVLSFSKPEVAGQNGESIEVQATELELS 181
            FLG+A+ VKGYRLW     K  VSRDV F E  +    K +   +   ++E++    E +
Sbjct: 676  FLGYADNVKGYRLWDPTARKIFVSRDVIFVENELQKEQKNDGTTKETATVEIEEKSGEEN 735

Query: 182  DAADDWLDHDEV-PNHGTTXXXXXXXXHPQLVVADPRPQRQVKEVHKYGHEKPVKHYGQV 358
              A+   +H+E  PN                 V D  P+R  +++ K         Y   
Sbjct: 736  SEAEP--EHEEQEPNE----------------VNDAEPRRTTRQIRKPSWHS---EYVMA 774

Query: 359  DLVAYALNIEDDEPDSFKEAVRDAHYRDWLVAMQKMVEARDKFCTWEFVSLPKGKRVLG 535
               AY L  ED EP +F EAV  +    W+ AMQ+ +EA  +  TWE V LPKG++ +G
Sbjct: 775  SHDAYCLLSEDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRNNTWELVELPKGRKAIG 833


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 89.4 bits (220), Expect = 6e-16
 Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
 Frame = +2

Query: 2    FLGFANGVKGYRLWCLEDH--KFLVSRDVTFDETSVLSFSKP--EVAGQNGESIEV-QAT 166
            FLG+A GVKGYRLWC ED   KF++SRDVTFDE+++    K   ++AG +   +   Q  
Sbjct: 996  FLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKV 1055

Query: 167  ELELSDAADDWLDHDEVPNHGTTXXXXXXXXHPQLVVADPRPQRQVKEVHKYGHEKPVKH 346
            E E+    ++ +D        T+        +    +A  RP+R+++   +Y        
Sbjct: 1056 EFEVDAPMENGVDD-------TSEEQPVIDQNDSQSIAAXRPRREIRRPMRYVDCVSANI 1108

Query: 347  YGQVDL-VAYALNIEDDEPDSFKEAVRDAHYRDWLVAMQKMVEARDKFCTWEFVSLPKGK 523
               V   +A A  I  +EP S+KEA+     + WL +M   + +  K  TWE V LP+G 
Sbjct: 1109 TNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGV 1168

Query: 524  RVLGC 538
            + + C
Sbjct: 1169 KPVDC 1173