BLASTX nr result
ID: Coptis24_contig00016689
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00016689
(577 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284404.1| PREDICTED: uncharacterized protein At2g41620... 174 6e-59
ref|XP_002519809.1| nuclear pore complex protein nup93, putative... 168 4e-57
ref|XP_002329719.1| predicted protein [Populus trichocarpa] gi|2... 162 7e-55
emb|CAN74373.1| hypothetical protein VITISV_010199 [Vitis vinifera] 157 1e-53
ref|XP_002317735.1| predicted protein [Populus trichocarpa] gi|2... 152 2e-52
>ref|XP_002284404.1| PREDICTED: uncharacterized protein At2g41620 [Vitis vinifera]
gi|297739625|emb|CBI29807.3| unnamed protein product
[Vitis vinifera]
Length = 863
Score = 174 bits (442), Expect(2) = 6e-59
Identities = 88/128 (68%), Positives = 105/128 (82%), Gaps = 1/128 (0%)
Frame = -3
Query: 383 DWQKEKLDFLQSLSRFSMLPRTNXXXXXXXT-RPGQMASMVSSPQVSAGPAGMDLVPLGN 207
DWQKEK DFLQSLSR S LP+TN RPGQ+ASM+SSPQVS+G + M+LVPL N
Sbjct: 139 DWQKEKRDFLQSLSRISTLPKTNISDSSTGATRPGQIASMISSPQVSSGLSSMELVPLAN 198
Query: 206 KSVLDQKASVYAGVVRNLNNARERALPFKPATAFKTAYEGLGLSSTGGKSVSMQKIWHLI 27
K VL++K SVYA VV+NLN+ARER LPFKPATAFK AY+ LGL ++GGKSV+MQKIWHLI
Sbjct: 199 KPVLEKKTSVYAEVVKNLNSARERGLPFKPATAFKGAYDSLGLETSGGKSVNMQKIWHLI 258
Query: 26 QTLVAENS 3
QTL+ E++
Sbjct: 259 QTLMGEDT 266
Score = 78.6 bits (192), Expect(2) = 6e-59
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = -2
Query: 576 EEYLQQVHEMAMVSAIQEAQKDNLRCFNDHMLHVMEEDWQKE 451
EEYLQQVHEMA+VSAIQEAQKDNL+ FND+M+ VMEEDWQKE
Sbjct: 102 EEYLQQVHEMAIVSAIQEAQKDNLKSFNDYMMKVMEEDWQKE 143
>ref|XP_002519809.1| nuclear pore complex protein nup93, putative [Ricinus communis]
gi|223541048|gb|EEF42605.1| nuclear pore complex protein
nup93, putative [Ricinus communis]
Length = 710
Score = 168 bits (425), Expect(2) = 4e-57
Identities = 85/128 (66%), Positives = 99/128 (77%), Gaps = 1/128 (0%)
Frame = -3
Query: 383 DWQKEKLDFLQSLSRFSMLPRTNXXXXXXXT-RPGQMASMVSSPQVSAGPAGMDLVPLGN 207
DWQKEK DFLQSLSR S LPRTN R GQ+AS+ SSPQ S+GP GM+LVPL N
Sbjct: 108 DWQKEKRDFLQSLSRISALPRTNAIETSSGGTRSGQIASVASSPQASSGPIGMELVPLAN 167
Query: 206 KSVLDQKASVYAGVVRNLNNARERALPFKPATAFKTAYEGLGLSSTGGKSVSMQKIWHLI 27
+L++KAS YA VV+NLNNARE L FKPATAFK AY+ LG ++GGKSV+MQK+WHLI
Sbjct: 168 MPILEKKASAYAEVVKNLNNAREHGLQFKPATAFKNAYDSLGHEASGGKSVNMQKMWHLI 227
Query: 26 QTLVAENS 3
QTL+ ENS
Sbjct: 228 QTLMGENS 235
Score = 79.0 bits (193), Expect(2) = 4e-57
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = -2
Query: 576 EEYLQQVHEMAMVSAIQEAQKDNLRCFNDHMLHVMEEDWQKE 451
EEYLQQVHEMAMVSAIQEAQKD+LR FND+ML V+EEDWQKE
Sbjct: 71 EEYLQQVHEMAMVSAIQEAQKDSLRSFNDYMLKVLEEDWQKE 112
>ref|XP_002329719.1| predicted protein [Populus trichocarpa] gi|222870627|gb|EEF07758.1|
predicted protein [Populus trichocarpa]
Length = 863
Score = 162 bits (410), Expect(2) = 7e-55
Identities = 81/128 (63%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
Frame = -3
Query: 383 DWQKEKLDFLQSLSRFSMLPRTNXXXXXXXT-RPGQMASMVSSPQVSAGPAGMDLVPLGN 207
DWQKE+ DFLQSLSR S LPRTN R GQ+AS+ SSP S+GP+GM++VPL N
Sbjct: 139 DWQKERCDFLQSLSRISSLPRTNIVDSSTEGTRSGQLASLASSPHASSGPSGMEIVPLAN 198
Query: 206 KSVLDQKASVYAGVVRNLNNARERALPFKPATAFKTAYEGLGLSSTGGKSVSMQKIWHLI 27
K +L++KAS A VV+NLN+ARE FKPATAFK AYE LG+ +GGKSV+MQKIWHL+
Sbjct: 199 KPILEKKASACAEVVKNLNHAREHGSQFKPATAFKGAYESLGVEVSGGKSVNMQKIWHLV 258
Query: 26 QTLVAENS 3
QTLV EN+
Sbjct: 259 QTLVGENT 266
Score = 77.4 bits (189), Expect(2) = 7e-55
Identities = 35/42 (83%), Positives = 39/42 (92%)
Frame = -2
Query: 576 EEYLQQVHEMAMVSAIQEAQKDNLRCFNDHMLHVMEEDWQKE 451
EEYLQQ HEMAMVSAIQEAQKDN+R FND+M+ V+EEDWQKE
Sbjct: 102 EEYLQQFHEMAMVSAIQEAQKDNVRSFNDYMMRVLEEDWQKE 143
>emb|CAN74373.1| hypothetical protein VITISV_010199 [Vitis vinifera]
Length = 1843
Score = 157 bits (396), Expect(2) = 1e-53
Identities = 82/128 (64%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Frame = -3
Query: 383 DWQKEKLDFLQSLSRFSMLPRTNXXXXXXXT-RPGQMASMVSSPQVSAGPAGMDLVPLGN 207
DWQKEK DFLQSLSR S LP+TN RPGQ+ASM+SSPQVS+G + M+LVPL N
Sbjct: 139 DWQKEKRDFLQSLSRISTLPKTNISDSSTGATRPGQIASMISSPQVSSGLSSMELVPLAN 198
Query: 206 KSVLDQKASVYAGVVRNLNNARERALPFKPATAFKTAYEGLGLSSTGGKSVSMQKIWHLI 27
K VL++K SVYA VV+NLN+ARER LPFK + + AY+ LGL ++GGKSV+MQKIWHLI
Sbjct: 199 KPVLEKKTSVYAEVVKNLNSARERGLPFKLS---EGAYDSLGLETSGGKSVNMQKIWHLI 255
Query: 26 QTLVAENS 3
QTL+ E++
Sbjct: 256 QTLMGEDT 263
Score = 78.6 bits (192), Expect(2) = 1e-53
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = -2
Query: 576 EEYLQQVHEMAMVSAIQEAQKDNLRCFNDHMLHVMEEDWQKE 451
EEYLQQVHEMA+VSAIQEAQKDNL+ FND+M+ VMEEDWQKE
Sbjct: 102 EEYLQQVHEMAIVSAIQEAQKDNLKSFNDYMMKVMEEDWQKE 143
>ref|XP_002317735.1| predicted protein [Populus trichocarpa] gi|222858408|gb|EEE95955.1|
predicted protein [Populus trichocarpa]
Length = 863
Score = 152 bits (385), Expect(2) = 2e-52
Identities = 78/128 (60%), Positives = 94/128 (73%), Gaps = 1/128 (0%)
Frame = -3
Query: 383 DWQKEKLDFLQSLSRFSMLPRTNXXXXXXXT-RPGQMASMVSSPQVSAGPAGMDLVPLGN 207
DWQKE+ DFLQSLSR S LP+TN R Q+AS+ SSP VS+G +GM+ +PL N
Sbjct: 139 DWQKERRDFLQSLSRISSLPKTNLADTSTGVTRSRQIASLASSPHVSSGSSGMENLPLAN 198
Query: 206 KSVLDQKASVYAGVVRNLNNARERALPFKPATAFKTAYEGLGLSSTGGKSVSMQKIWHLI 27
KS +++KAS YA V+NLN ARE FKPATAFK AYE LG +GGKSV+MQKIWHL+
Sbjct: 199 KSFVEKKASAYAEAVKNLNRAREHGSQFKPATAFKGAYESLGAEVSGGKSVNMQKIWHLV 258
Query: 26 QTLVAENS 3
QTLV EN+
Sbjct: 259 QTLVGENT 266
Score = 79.0 bits (193), Expect(2) = 2e-52
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = -2
Query: 576 EEYLQQVHEMAMVSAIQEAQKDNLRCFNDHMLHVMEEDWQKE 451
EEYLQQVHEMAMVSAIQEAQKDN+R FND+M+ V+EEDWQKE
Sbjct: 102 EEYLQQVHEMAMVSAIQEAQKDNVRSFNDYMMKVLEEDWQKE 143