BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016683
         (558 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           266   1e-69
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         258   3e-67
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   248   4e-64
ref|XP_003634235.1| PREDICTED: uncharacterized protein LOC100248...   246   2e-63
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            245   3e-63

>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  266 bits (681), Expect = 1e-69
 Identities = 125/180 (69%), Positives = 152/180 (84%)
 Frame = +3

Query: 18   THELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKKIDFDEIFSPVVKM 197
            T ELV+ P+G++ LKNKW++K+KH+E+N   R KARLVVKGF QRK IDFDEIFSPVVKM
Sbjct: 843  TFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDEIFSPVVKM 902

Query: 198  TSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEEFEVKGKEHLVCKLIKRLY 377
            TSIR VLG+ AS+NLE+EQ+DVKT FLHGDLEE++YM+QP+ F+ KGKE  VC+L K LY
Sbjct: 903  TSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGKEDYVCRLRKSLY 962

Query: 378  GLKQAPRQWYIKFGSFMAKQEYKKSVSDHCVFLQRFSDGDFIVLLLYVDDMLIIGPNINK 557
            GLKQAPRQWY KF S M +  YKK+ SDHCVF Q+FSD DFI+LLLYVDDMLI+G N+++
Sbjct: 963  GLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGRNVSR 1022


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  258 bits (660), Expect = 3e-67
 Identities = 122/180 (67%), Positives = 149/180 (82%)
 Frame = +3

Query: 18   THELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKKIDFDEIFSPVVKM 197
            T ELV+ P+ RK LKN+W+Y+VKHEE     R KARLVVKGF Q+K IDFDEIFSPVVK 
Sbjct: 840  TFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIFSPVVKF 899

Query: 198  TSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEEFEVKGKEHLVCKLIKRLY 377
            +SIRVVLG+ A +++EIEQ+DVKT FLHGDL+E++YM+QPE F+VKGKE  VC+L K LY
Sbjct: 900  SSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLY 959

Query: 378  GLKQAPRQWYIKFGSFMAKQEYKKSVSDHCVFLQRFSDGDFIVLLLYVDDMLIIGPNINK 557
            GLKQAPRQWY KF S M+K  YKK+ SDHCVF+ R+SD DF++LLLYVDDMLI+G N ++
Sbjct: 960  GLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASR 1019


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  248 bits (634), Expect = 4e-64
 Identities = 117/175 (66%), Positives = 148/175 (84%)
 Frame = +3

Query: 18   THELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKKIDFDEIFSPVVKM 197
            T++LVE P+G++ LK KW++K+K + +   +R+KARLVVKGF Q+K IDFDEIFSPVVKM
Sbjct: 842  TYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKM 901

Query: 198  TSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEEFEVKGKEHLVCKLIKRLY 377
            TSIR +L + AS++LE+EQLDVKT FLHGDLEE++YM+QPE FEV GK+H+VCKL K LY
Sbjct: 902  TSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLY 961

Query: 378  GLKQAPRQWYIKFGSFMAKQEYKKSVSDHCVFLQRFSDGDFIVLLLYVDDMLIIG 542
            GLKQAPRQWY+KF SFM  Q Y K+ SD CV+ +RFS+ +FI+LLLYVDDMLI+G
Sbjct: 962  GLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVG 1016


>ref|XP_003634235.1| PREDICTED: uncharacterized protein LOC100248387 [Vitis vinifera]
          Length = 952

 Score =  246 bits (628), Expect = 2e-63
 Identities = 117/178 (65%), Positives = 150/178 (84%)
 Frame = +3

Query: 24  ELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKKIDFDEIFSPVVKMTS 203
           ELV+ P+G++ LKN+W+Y+VK EE+    R+KARLVVKGF Q+K IDFDEIFSPVVKMTS
Sbjct: 27  ELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGIDFDEIFSPVVKMTS 86

Query: 204 IRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEEFEVKGKEHLVCKLIKRLYGL 383
           IRVVLG+ AS++LEI+Q+DVKT FLHGDL++++YM+Q E F +KGKE  VCKL K LYGL
Sbjct: 87  IRVVLGLAASLDLEIQQMDVKTAFLHGDLDKEIYMEQLEGFVLKGKEDYVCKLKKSLYGL 146

Query: 384 KQAPRQWYIKFGSFMAKQEYKKSVSDHCVFLQRFSDGDFIVLLLYVDDMLIIGPNINK 557
           KQA RQWY KF S M +Q Y+K+ SDHCVF+Q+FSD DF++LLLYVDD+L +G N+++
Sbjct: 147 KQALRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSD-DFVILLLYVDDILTVGRNVSR 203


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  245 bits (626), Expect = 3e-63
 Identities = 113/178 (63%), Positives = 150/178 (84%)
 Frame = +3

Query: 18  THELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKKIDFDEIFSPVVKM 197
           T++LV+ P+G+K+LKN+W++K K ++ N  ++ KARLVVKG  Q+K IDFDEIF+PVVKM
Sbjct: 203 TYDLVKPPKGKKVLKNRWLFKNK-KDGNKLVKRKARLVVKGCHQKKGIDFDEIFAPVVKM 261

Query: 198 TSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEEFEVKGKEHLVCKLIKRLY 377
           TSIR++LG+   +NLE+EQLDVKT FLHGDL E++YM+QPE FEVKGKE+ VCKL K LY
Sbjct: 262 TSIRMILGLATCLNLELEQLDVKTAFLHGDLHEEIYMEQPEGFEVKGKENFVCKLKKSLY 321

Query: 378 GLKQAPRQWYIKFGSFMAKQEYKKSVSDHCVFLQRFSDGDFIVLLLYVDDMLIIGPNI 551
           GLKQAPRQWY KF SFM+  EYK++ +D CV+ ++FS+G+FI+L LYVDDMLI+G ++
Sbjct: 322 GLKQAPRQWYHKFDSFMSNNEYKRTTADPCVYFRKFSEGNFIILCLYVDDMLIVGQDV 379