BLASTX nr result
ID: Coptis24_contig00016678
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00016678
(1423 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272104.1| PREDICTED: pentatricopeptide repeat-containi... 310 5e-82
ref|XP_004136798.1| PREDICTED: pentatricopeptide repeat-containi... 277 6e-72
ref|XP_002454838.1| hypothetical protein SORBIDRAFT_04g038280 [S... 218 4e-54
ref|NP_001048609.1| Os02g0829800 [Oryza sativa Japonica Group] g... 216 1e-53
ref|NP_001144243.1| hypothetical protein [Zea mays] gi|195638968... 216 1e-53
>ref|XP_002272104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial [Vitis vinifera]
gi|297738261|emb|CBI27462.3| unnamed protein product
[Vitis vinifera]
Length = 386
Score = 310 bits (795), Expect = 5e-82
Identities = 155/302 (51%), Positives = 212/302 (70%)
Frame = +1
Query: 1 PLLKTEGFWIRIMMLYSHAKMLDQVIATFDRIAELDCNQTDKSMCALLSACLQNRRFDLV 180
P +TEGFWIR++MLYS + M+D + TF ++ + T+KS+CA+L+ L N D +
Sbjct: 91 PHPRTEGFWIRLIMLYSTSGMVDHALRTFHQMVQDRVQLTEKSLCAILTVYLDNDLIDQL 150
Query: 181 HQYIESVPAKTAIKPGVVAYNLLMRAYCDEKKIDSARSLLDKMESEKGIKPDVASYNVVL 360
H ++P++ + PG +Y+L+++A+C +K ++SAR LL KME+ PD+ SYNV+L
Sbjct: 151 HTVFNTMPSEIGVSPGTKSYSLVLKAFCQQKDMESARKLLHKMEN-----PDIGSYNVLL 205
Query: 361 TGYLRNGEEEKFDKLFDELSNKGLEPNLVTYNLRIKWFCKKKDCDRAKEILQEMLAKGVK 540
Y NG+ +FD++ E+ NKGLE + TYN RI FCK K+ RAK++L EM+AKGVK
Sbjct: 206 EAYSENGDGVEFDEILKEIKNKGLEHDCTTYNHRILRFCKNKESVRAKKLLDEMVAKGVK 265
Query: 541 PNVNSYNAVIDGFCKIADFESAKKVFDAMNAGDESVKPNSDSYITLIQQLVQEKEFIQAL 720
PN SYN +I GFCK+ DFESA+KV M A D V P S SYITL Q +V+E EF AL
Sbjct: 266 PNSASYNMIIHGFCKVGDFESAQKVLGRMLA-DGYVAPCSISYITLFQHMVKEGEFDSAL 324
Query: 721 DMCKESLQKKWVPPFTSMEGLVKGLVEISKADEAKEIVETMKKRLRGSAPESWSKVEGLL 900
+MCKE +++KWVPPF +M+GLVKGLVEISK + AKE+VE MKKRL+G+A +SW E L
Sbjct: 325 NMCKEIIRRKWVPPFEAMDGLVKGLVEISKVEAAKEVVEKMKKRLKGNAADSWKTHEAAL 384
Query: 901 PL 906
PL
Sbjct: 385 PL 386
>ref|XP_004136798.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Cucumis sativus]
gi|449494815|ref|XP_004159654.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Cucumis sativus]
Length = 405
Score = 277 bits (708), Expect = 6e-72
Identities = 135/304 (44%), Positives = 205/304 (67%), Gaps = 2/304 (0%)
Frame = +1
Query: 1 PLLKTEGFWIRIMMLYSHAKMLDQVIATFDR-IAELDCNQTDKSMCALLSACLQNRRFDL 177
P +EGFWIR++MLYS M++Q + D+ I CN ++KS+CA+LS L N +
Sbjct: 103 PSATSEGFWIRLIMLYSSVGMVNQALYILDQAILHKSCNLSEKSLCAILSVFLDNSMPEK 162
Query: 178 VHQYIESVPAKTAIKPGVVAYNLLMRAYCDEKKIDSARSLLDKM-ESEKGIKPDVASYNV 354
VH+ S+P K + P V++NL+++A+ + + SAR+ +D++ + + + P++ S+ +
Sbjct: 163 VHEMFRSIPEKIGVTPTAVSHNLVLKAFVRQNDLPSARNWIDELCKDDAKVIPNIDSFTI 222
Query: 355 VLTGYLRNGEEEKFDKLFDELSNKGLEPNLVTYNLRIKWFCKKKDCDRAKEILQEMLAKG 534
+L Y NG+ FD++ E+S +GLE NL TYN RI CK K+C RAK+IL EM++KG
Sbjct: 223 LLGAYWSNGDMIGFDEIEKEISKRGLEFNLATYNYRISRLCKNKECARAKKILDEMISKG 282
Query: 535 VKPNVNSYNAVIDGFCKIADFESAKKVFDAMNAGDESVKPNSDSYITLIQQLVQEKEFIQ 714
VKPN +SY+++I G+C + D ESA K+ + D V P S Y LI+ +V+E EF
Sbjct: 283 VKPNSSSYDSIIHGYCDVGDIESAMKILKGI-LEDGHVSPTSRIYYRLIRSMVKEGEFEM 341
Query: 715 ALDMCKESLQKKWVPPFTSMEGLVKGLVEISKADEAKEIVETMKKRLRGSAPESWSKVEG 894
AL+ C+E+++++WVPPF +ME LV+GLV +SK +EAKE+VE MKKRL+G A +SW K+E
Sbjct: 342 ALETCRETIKRRWVPPFEAMEALVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWRKIEA 401
Query: 895 LLPL 906
LPL
Sbjct: 402 ALPL 405
>ref|XP_002454838.1| hypothetical protein SORBIDRAFT_04g038280 [Sorghum bicolor]
gi|241934669|gb|EES07814.1| hypothetical protein
SORBIDRAFT_04g038280 [Sorghum bicolor]
Length = 419
Score = 218 bits (554), Expect = 4e-54
Identities = 116/304 (38%), Positives = 181/304 (59%), Gaps = 6/304 (1%)
Frame = +1
Query: 13 TEGFWIRIMMLYSHAKMLDQVIATFDRIAELDCNQTDKSMCALLSACLQNRRFDLVHQYI 192
+EGF +R++ LYS A M D + F + +D+++ ALLS NR +D +
Sbjct: 113 SEGFLLRLISLYSAAGMPDHSLTVFRLVNP----PSDRALSALLSTYHDNRLYDRAVRAF 168
Query: 193 ESVPAKTAIKPGVVAYNLLMRAYCDEKKIDSARSLLDKMESEKGIKPDVASYNVVLTGYL 372
++PA+ IKPG+V++N+L++A I +ARS DKM G++PD+ S N +L GYL
Sbjct: 169 NTLPAELGIKPGLVSHNVLLKALVASGDIAAARSAFDKMPDTAGVQPDIVSCNEILKGYL 228
Query: 373 RNGEEEKFDKLFDELS--NKGLEPNLVTYNLRIKWFCKKKDCDRAKEILQEMLAKGVKPN 546
G++ FD+L E++ N+ L+PN+ TYNLR+ C K+ A+E+L M A GV PN
Sbjct: 229 STGDDAAFDQLVKEIAGPNRRLKPNVGTYNLRMAMLCSKERSFEAEELLDAMGANGVPPN 288
Query: 547 VNSYNAVIDGFCKIADFESAKKVFDAM----NAGDESVKPNSDSYITLIQQLVQEKEFIQ 714
S+N VI G C + +A +F M + V PN ++YI L++ LV + F
Sbjct: 289 RASFNTVIKGLCNEGEVGAAMALFKRMPEVPRQKGKGVSPNFETYIMLLEALVNKNLFDP 348
Query: 715 ALDMCKESLQKKWVPPFTSMEGLVKGLVEISKADEAKEIVETMKKRLRGSAPESWSKVEG 894
AL++CKE L KW PPF +++GLV+ L++ KA A+E++ M+K ++G A + W+KVE
Sbjct: 349 ALEVCKECLHNKWAPPFQAVKGLVESLLKSRKAKHAREVLMAMRKAVKGDAKQEWTKVEA 408
Query: 895 LLPL 906
P+
Sbjct: 409 QFPM 412
>ref|NP_001048609.1| Os02g0829800 [Oryza sativa Japonica Group]
gi|48716331|dbj|BAD22943.1| membrane-associated
salt-inducible protein-like [Oryza sativa Japonica Group]
gi|113538140|dbj|BAF10523.1| Os02g0829800 [Oryza sativa
Japonica Group] gi|125584252|gb|EAZ25183.1| hypothetical
protein OsJ_08983 [Oryza sativa Japonica Group]
gi|215769058|dbj|BAH01287.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 423
Score = 216 bits (550), Expect = 1e-53
Identities = 119/302 (39%), Positives = 179/302 (59%), Gaps = 9/302 (2%)
Frame = +1
Query: 13 TEGFWIRIMMLYSHAKMLDQVIATFDRIAELDCNQTDKSMCALLSACLQNRRFDLVHQYI 192
+EGF IR++ LYS A M D ++TF + +D+++ ALLSA NR +D Q
Sbjct: 114 SEGFLIRLISLYSAAGMPDHSLSTFRIVTP----PSDRALSALLSAYHDNRLYDRAIQAF 169
Query: 193 ESVPAKTAIKPGVVAYNLLMRAYCDEKKIDSARSLLDKMESEKGIKPDVASYNVVLTGYL 372
++PA+ IKP VV++N+L++++ + SAR+L D+M S+ ++PD+ S N +L GYL
Sbjct: 170 RTLPAELGIKPSVVSHNVLLKSFVASGDLASARALFDEMPSKADVEPDIVSCNEILKGYL 229
Query: 373 RNGEEEKFDKLFDELSN-----KGLEPNLVTYNLRIKWFCKKKDCDRAKEILQEMLAKGV 537
+ FD+ + + + L+PN+ TYNLR+ C K A E+L M AKGV
Sbjct: 230 NAADYAAFDQFLKDNTTAAGGKRRLKPNVSTYNLRMASLCSKGRSFEAAELLDAMEAKGV 289
Query: 538 KPNVNSYNAVIDGFCKIADFESAKKVFDAM----NAGDESVKPNSDSYITLIQQLVQEKE 705
PN S+N VI G CK + +A +F M + V PNS++YI L++ LV +
Sbjct: 290 PPNRGSFNTVIQGLCKEGEVGAAVAIFKRMPEVPRPNGKGVLPNSETYIMLLEGLVNKGV 349
Query: 706 FIQALDMCKESLQKKWVPPFTSMEGLVKGLVEISKADEAKEIVETMKKRLRGSAPESWSK 885
F AL++ KE LQ KW PPF +++GL+KGL++ KA AKE+ M+K ++G A E W K
Sbjct: 350 FAPALEVFKECLQNKWAPPFQAVQGLIKGLLKSRKAKHAKEVAMAMRKVVKGDAKEEWKK 409
Query: 886 VE 891
VE
Sbjct: 410 VE 411
>ref|NP_001144243.1| hypothetical protein [Zea mays] gi|195638968|gb|ACG38952.1|
hypothetical protein [Zea mays]
gi|413939592|gb|AFW74143.1| hypothetical protein
ZEAMMB73_602318 [Zea mays]
Length = 419
Score = 216 bits (550), Expect = 1e-53
Identities = 115/304 (37%), Positives = 182/304 (59%), Gaps = 6/304 (1%)
Frame = +1
Query: 13 TEGFWIRIMMLYSHAKMLDQVIATFDRIAELDCNQTDKSMCALLSACLQNRRFDLVHQYI 192
+EGF +R++ LYS A M D +A F + +D+++ ALLSA NR +D +
Sbjct: 113 SEGFLLRLISLYSAAGMPDHSLAVFRLVKPA----SDRALSALLSAYHDNRLYDRTVRAF 168
Query: 193 ESVPAKTAIKPGVVAYNLLMRAYCDEKKIDSARSLLDKMESEKGIKPDVASYNVVLTGYL 372
++PA+ IKPG+V++N+L++A + +A +L D+M G++PD+ S N +L GYL
Sbjct: 169 NTLPAELGIKPGLVSHNVLLKALVASGDVAAAHTLFDEMPDTAGVQPDIVSCNEILKGYL 228
Query: 373 RNGEEEKFDKLFDELSN--KGLEPNLVTYNLRIKWFCKKKDCDRAKEILQEMLAKGVKPN 546
G+ + FD+L E++ + L+PN+ TYNLR+ C K A+E+L M A GV PN
Sbjct: 229 NAGDADAFDRLVKEIAGPKRRLKPNVGTYNLRMALLCSKMRSFEAEELLDVMGANGVPPN 288
Query: 547 VNSYNAVIDGFCKIADFESAKKVFDAM----NAGDESVKPNSDSYITLIQQLVQEKEFIQ 714
S+N VI G C + +A +F M + V PN ++YI L++ LV++ F
Sbjct: 289 RTSFNTVIKGLCNEGEVGAAMALFKRMPEVPRQHGKGVSPNFETYIMLLEALVKKNLFDP 348
Query: 715 ALDMCKESLQKKWVPPFTSMEGLVKGLVEISKADEAKEIVETMKKRLRGSAPESWSKVEG 894
AL++CKE L+ KW PPF +++GLV+GL++ KA A+E+ M+K ++G A + W KVE
Sbjct: 349 ALEICKECLRNKWAPPFQAVKGLVQGLLKSRKAKHAREVFMAMRKAVKGDAKQEWIKVEA 408
Query: 895 LLPL 906
P+
Sbjct: 409 QFPM 412