BLASTX nr result

ID: Coptis24_contig00016670 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016670
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273425.1| PREDICTED: mRNA-decapping enzyme-like protei...    43   3e-06

>ref|XP_002273425.1| PREDICTED: mRNA-decapping enzyme-like protein [Vitis vinifera]
           gi|296084878|emb|CBI28287.3| unnamed protein product
           [Vitis vinifera]
          Length = 369

 Score = 42.7 bits (99), Expect(2) = 3e-06
 Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +2

Query: 104 SDFEESETVGKN-VMEVLLESPSSNSTEPNIANAPEDSSFLKFFXXXXXXXXXXXXXXPG 280
           S+FEE E V    VM+  LE   S+ST  N+A+ P+D SF+ FF               G
Sbjct: 151 SEFEELEAVPTMAVMDGPLEP--SSSTSSNVADVPDDPSFVNFFSEAVTIGNASSVAVTG 208

Query: 281 Q-YQPPAVIPPSFRSPN-VPTTVPALE 355
           Q YQ  A  P     PN +P TVP L+
Sbjct: 209 QPYQSSATPPLPSCPPNAIPGTVPTLQ 235



 Score = 33.1 bits (74), Expect(2) = 3e-06
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +1

Query: 1   RILSAYSKVPPKLEVCSTK 57
           RIL+AYSKVPPK +V STK
Sbjct: 132 RILNAYSKVPPKTKVSSTK 150


Top