BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016552
         (687 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi...   251   1e-64
ref|XP_002525572.1| pentatricopeptide repeat-containing protein,...   244   1e-62
gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|...   194   1e-47
ref|NP_179518.1| pentatricopeptide repeat-containing protein [Ar...   194   1e-47
ref|XP_002886049.1| pentatricopeptide repeat-containing protein ...   192   4e-47

>ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  251 bits (640), Expect = 1e-64
 Identities = 125/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)
 Frame = -1

Query: 687 VGQNLLSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGM-VNT 511
           V +N+  +AL L+C+M  LNIFP  GVCNSL++ LLES+++ LAW  L EM  +G+ +N 
Sbjct: 162 VKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNA 221

Query: 510 SIISLFIHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFK 331
           SIISLFI   C++G + +  KLL+EM+  GIKPDVVAYTIVI ++CKM LLKEATS+LFK
Sbjct: 222 SIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFK 281

Query: 330 MTRTGFLPDSVTVASVVNGYCVRRRLNEAVTVLKVFGFAANVFVYNSFISKLCWDGDMVQ 151
           MT+ G   DSV+V+SVV+GYC   +  EA+ VL+VF  + N+FV+NSFISKLC DG+M++
Sbjct: 282 MTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLK 341

Query: 150 AHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           A ++F +M E+G+ PD  SYTT++ GYC V +++ AL  +G+MLK G
Sbjct: 342 AAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRG 388



 Score =  112 bits (279), Expect = 9e-23
 Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 4/225 (1%)
 Frame = -1

Query: 672  LSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGMVNTSI-ISL 496
            +S AL  + +M+   I P+      LI    +   ME+A  +   M   G+V   +  + 
Sbjct: 374  ISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNT 433

Query: 495  FIHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTG 316
             ++    +G L  A +LL  M++ G+ PD+V Y I+IH + K GL+ EA  +L ++TR G
Sbjct: 434  LMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRG 493

Query: 315  FLPDSVTVASVVNGYCVRRRLNEAVTV---LKVFGFAANVFVYNSFISKLCWDGDMVQAH 145
            F PD VT  +++ G+  +    EA  +   +       +V   ++ ++  C    M +A+
Sbjct: 494  FSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEAN 553

Query: 144  ELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
             LFH+M + G+  D   Y ++I G+C +GN++ A  LV  M+++G
Sbjct: 554  VLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHG 598



 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 4/205 (1%)
 Frame = -1

Query: 636 MLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGMVNTSI-ISLFIHELCAEGRLA 460
           + N+ P   V NS I KL     M  A  +  +M   G++      +  +   C    ++
Sbjct: 316 VFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDIS 375

Query: 459 SACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGFLPDSVTVASVV 280
           +A K L +M   GI+P V  YT++I + CK G ++ A  +  +M   G +PD V+  +++
Sbjct: 376 NALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLM 435

Query: 279 NGYCVRRRLNEAVTVLKVF---GFAANVFVYNSFISKLCWDGDMVQAHELFHEMSELGIH 109
           NGY  +  L +A  +L +    G + ++  YN  I  L   G + +A ++  E++  G  
Sbjct: 436 NGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFS 495

Query: 108 PDSCSYTTIIKGYCGVGNLNKALML 34
           PD  ++T II G+   GN  +A +L
Sbjct: 496 PDVVTFTNIIGGFSNKGNFEEAFLL 520


>ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535151|gb|EEF36831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 687

 Score =  244 bits (623), Expect = 1e-62
 Identities = 119/227 (52%), Positives = 168/227 (74%), Gaps = 1/227 (0%)
 Frame = -1

Query: 687 VGQNLLSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGM-VNT 511
           V ++ +S+AL+L+  + +LNIFP+ GVCNSL++ LL S +++LAW IL+ M   GM +N 
Sbjct: 195 VTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKALLRSHQLDLAWDILEGMQSFGMHLNA 254

Query: 510 SIISLFIHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFK 331
           SI+SLFI   CAEG + S  K+L+EM+NYGIK DV+AYTIVI A+CK+  +K ATS+LFK
Sbjct: 255 SILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVKVATSLLFK 314

Query: 330 MTRTGFLPDSVTVASVVNGYCVRRRLNEAVTVLKVFGFAANVFVYNSFISKLCWDGDMVQ 151
           M   G   DSV+V+SV++GYC + R ++A+ +L  F    N+FVY+SF++KLC DG+M++
Sbjct: 315 MIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLNFFNVRPNIFVYSSFMTKLCKDGNMLE 374

Query: 150 AHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           A + F EMSE G++PD   YT II GYC VG++NKA   +G+MLK G
Sbjct: 375 ASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFG 421



 Score = 99.4 bits (246), Expect = 6e-19
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 4/225 (1%)
 Frame = -1

Query: 672  LSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGMVNTSI-ISL 496
            ++ A   +  M+   I P+      LI    +S +M +A  +L  M + G++   +  + 
Sbjct: 407  INKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNC 466

Query: 495  FIHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTG 316
             I     +G L  A +LL  M++ G+ PD V Y  +IH++   G   EA  +L ++ R G
Sbjct: 467  LIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRG 526

Query: 315  FLPDSVTVASVVNGYCVRRRLNEAVTVLKVFG---FAANVFVYNSFISKLCWDGDMVQAH 145
              PD +T   V++G+  +    EA  V           +V   ++ ++  C    M +A+
Sbjct: 527  LSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEAN 586

Query: 144  ELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
             LF +M + G+ PD   Y  +I G+C  GN+N A  LV  M+ +G
Sbjct: 587  ALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDG 631



 Score = 85.9 bits (211), Expect = 7e-15
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 3/224 (1%)
 Frame = -1

Query: 672 LSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGMVNTSIISLF 493
           + +A  L+ +M+   I   S   +S+I    +    + A  +L+  ++R   N  + S F
Sbjct: 305 VKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLNFFNVRP--NIFVYSSF 362

Query: 492 IHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGF 313
           + +LC +G +  A K   EM  +G+ PD   YTI+I   CK+G + +A   L +M + G 
Sbjct: 363 MTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGI 422

Query: 312 LPDSVTVASVVNGYCVRRRLNEAVTVLK---VFGFAANVFVYNSFISKLCWDGDMVQAHE 142
            P   T   ++N  C    +  A  +L+   + G   +V  +N  I      G + +A E
Sbjct: 423 TPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFE 482

Query: 141 LFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           L   M   G+ PD+ +Y  +I      G  N+A  ++ ++++ G
Sbjct: 483 LLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRG 526


>gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|BAD94048.1|
           putative salt-inducible protein [Arabidopsis thaliana]
           gi|110738808|dbj|BAF01327.1| putative salt-inducible
           protein [Arabidopsis thaliana]
          Length = 693

 Score =  194 bits (494), Expect = 1e-47
 Identities = 95/227 (41%), Positives = 150/227 (66%), Gaps = 1/227 (0%)
 Frame = -1

Query: 687 VGQNLLSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGM-VNT 511
           + +  ++MAL L  ++    IFP+ GVC SL++++L    +ELA   ++ M  RG  +N 
Sbjct: 212 IRERKVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNA 271

Query: 510 SIISLFIHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFK 331
           +++SLFI + C++G      +LL+ M++YGI+PD+VA+T+ I  +CK G LKEATS+LFK
Sbjct: 272 AVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFK 331

Query: 330 MTRTGFLPDSVTVASVVNGYCVRRRLNEAVTVLKVFGFAANVFVYNSFISKLCWDGDMVQ 151
           +   G   DSV+V+SV++G+C   +  EA+ ++  F    N+FVY+SF+S +C  GDM++
Sbjct: 332 LKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLR 391

Query: 150 AHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           A  +F E+ ELG+ PD   YTT+I GYC +G  +KA    G +LK+G
Sbjct: 392 ASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG 438



 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
 Frame = -1

Query: 468 RLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGFLPDSVTVA 289
           +L    +L+ EM++ GI PDV  Y I+IH++   G + EA  ++ ++ R GF+P ++   
Sbjct: 493 QLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFT 552

Query: 288 SVVNGYCVRRRLNEAVTV---LKVFGFAANVFVYNSFISKLCWDGDMVQAHELFHEMSEL 118
            V+ G+  R    EA  +   +       +V   ++ +   C    M +A  LF+++ + 
Sbjct: 553 DVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDA 612

Query: 117 GIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           G+ PD   Y T+I GYC VG++ KA  L+G M++ G
Sbjct: 613 GLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRG 648



 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 52/202 (25%), Positives = 103/202 (50%), Gaps = 7/202 (3%)
 Frame = -1

Query: 603  NSLIRKLLESKEMELAWGILDEMHIRGMV-NTSIISLFIHELCAEGRLASACKLLVEMQN 427
            N+L+    ++ ++   + ++DEM   G+  + +  ++ IH +   G +  A +++ E+  
Sbjct: 482  NNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIR 541

Query: 426  YGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGFLPDSVTVASVVNGYCVRRRLNE 247
             G  P  +A+T VI    K G  +EA  + F M      PD VT +++++GYC  +R+ +
Sbjct: 542  RGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEK 601

Query: 246  AVTVLKVF---GFAANVFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIK 76
            A+ +       G   +V +YN+ I   C  GD+ +A EL   M + G+ P+  ++  ++ 
Sbjct: 602  AIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVL 661

Query: 75   GYCG---VGNLNKALMLVGQML 19
            G  G   V +   A ML+ +++
Sbjct: 662  GLEGKRFVNSETHASMLLEEII 683



 Score = 72.4 bits (176), Expect = 8e-11
 Identities = 53/225 (23%), Positives = 105/225 (46%), Gaps = 4/225 (1%)
 Frame = -1

Query: 672 LSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGMVNTSIISLF 493
           L  A  ++ ++ +  I   S   +S+I    +  + E A  ++    +R   N  + S F
Sbjct: 322 LKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP--NIFVYSSF 379

Query: 492 IHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGF 313
           +  +C+ G +  A  +  E+   G+ PD V YT +I   C +G   +A      + ++G 
Sbjct: 380 LSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG- 438

Query: 312 LPDSVTVASVVNGYCVR-RRLNEAVTV---LKVFGFAANVFVYNSFISKLCWDGDMVQAH 145
            P S+T ++++ G C R   +++A +V   +K  G   +V  YN+ +        + +  
Sbjct: 439 NPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVF 498

Query: 144 ELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           EL  EM   GI PD  +Y  +I      G +++A  ++ ++++ G
Sbjct: 499 ELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRG 543


>ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|334184304|ref|NP_001189552.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g19280 gi|3135258|gb|AAC16458.1| putative
           salt-inducible protein [Arabidopsis thaliana]
           gi|330251769|gb|AEC06863.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|330251770|gb|AEC06864.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score =  194 bits (494), Expect = 1e-47
 Identities = 95/227 (41%), Positives = 150/227 (66%), Gaps = 1/227 (0%)
 Frame = -1

Query: 687 VGQNLLSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGM-VNT 511
           + +  ++MAL L  ++    IFP+ GVC SL++++L    +ELA   ++ M  RG  +N 
Sbjct: 212 IRERKVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNA 271

Query: 510 SIISLFIHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFK 331
           +++SLFI + C++G      +LL+ M++YGI+PD+VA+T+ I  +CK G LKEATS+LFK
Sbjct: 272 AVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFK 331

Query: 330 MTRTGFLPDSVTVASVVNGYCVRRRLNEAVTVLKVFGFAANVFVYNSFISKLCWDGDMVQ 151
           +   G   DSV+V+SV++G+C   +  EA+ ++  F    N+FVY+SF+S +C  GDM++
Sbjct: 332 LKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLR 391

Query: 150 AHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           A  +F E+ ELG+ PD   YTT+I GYC +G  +KA    G +LK+G
Sbjct: 392 ASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG 438



 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
 Frame = -1

Query: 468 RLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGFLPDSVTVA 289
           +L    +L+ EM++ GI PDV  Y I+IH++   G + EA  ++ ++ R GF+P ++   
Sbjct: 493 QLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFT 552

Query: 288 SVVNGYCVRRRLNEAVTV---LKVFGFAANVFVYNSFISKLCWDGDMVQAHELFHEMSEL 118
            V+ G+  R    EA  +   +       +V   ++ +   C    M +A  LF+++ + 
Sbjct: 553 DVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDA 612

Query: 117 GIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           G+ PD   Y T+I GYC VG++ KA  L+G M++ G
Sbjct: 613 GLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRG 648



 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 52/202 (25%), Positives = 103/202 (50%), Gaps = 7/202 (3%)
 Frame = -1

Query: 603  NSLIRKLLESKEMELAWGILDEMHIRGMV-NTSIISLFIHELCAEGRLASACKLLVEMQN 427
            N+L+    ++ ++   + ++DEM   G+  + +  ++ IH +   G +  A +++ E+  
Sbjct: 482  NNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIR 541

Query: 426  YGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGFLPDSVTVASVVNGYCVRRRLNE 247
             G  P  +A+T VI    K G  +EA  + F M      PD VT +++++GYC  +R+ +
Sbjct: 542  RGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEK 601

Query: 246  AVTVLKVF---GFAANVFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIK 76
            A+ +       G   +V +YN+ I   C  GD+ +A EL   M + G+ P+  ++  ++ 
Sbjct: 602  AIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVL 661

Query: 75   GYCG---VGNLNKALMLVGQML 19
            G  G   V +   A ML+ +++
Sbjct: 662  GLEGKRFVNSETHASMLLEEII 683



 Score = 72.4 bits (176), Expect = 8e-11
 Identities = 53/225 (23%), Positives = 105/225 (46%), Gaps = 4/225 (1%)
 Frame = -1

Query: 672 LSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGMVNTSIISLF 493
           L  A  ++ ++ +  I   S   +S+I    +  + E A  ++    +R   N  + S F
Sbjct: 322 LKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP--NIFVYSSF 379

Query: 492 IHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGF 313
           +  +C+ G +  A  +  E+   G+ PD V YT +I   C +G   +A      + ++G 
Sbjct: 380 LSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG- 438

Query: 312 LPDSVTVASVVNGYCVR-RRLNEAVTV---LKVFGFAANVFVYNSFISKLCWDGDMVQAH 145
            P S+T ++++ G C R   +++A +V   +K  G   +V  YN+ +        + +  
Sbjct: 439 NPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVF 498

Query: 144 ELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           EL  EM   GI PD  +Y  +I      G +++A  ++ ++++ G
Sbjct: 499 ELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRG 543


>ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331889|gb|EFH62308.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 755

 Score =  192 bits (489), Expect = 4e-47
 Identities = 94/227 (41%), Positives = 149/227 (65%), Gaps = 1/227 (0%)
 Frame = -1

Query: 687 VGQNLLSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGM-VNT 511
           + +  + MAL L  ++    IFP+ GVC SL+ ++L +  +ELA   ++ M  RG  +N 
Sbjct: 279 IKERKVDMALKLTYKIDQFGIFPSRGVCISLVEEILRAHGLELAREFVEHMLSRGRHLNA 338

Query: 510 SIISLFIHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFK 331
           +++SLFI + C++G      +LL+ M++YGI+PD+VA+T+ I  +CK G L+EATS+LFK
Sbjct: 339 ALLSLFIRKYCSDGYFDKGWELLMGMKDYGIRPDIVAFTVFIDKLCKAGFLREATSVLFK 398

Query: 330 MTRTGFLPDSVTVASVVNGYCVRRRLNEAVTVLKVFGFAANVFVYNSFISKLCWDGDMVQ 151
           +   G   DSV+V+SV++G+C   +  EA+ ++  F    N+FVY+SF+S +C  GDM++
Sbjct: 399 LKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLR 458

Query: 150 AHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
           A  +F E+ ELG+ PD   YTT+I GYC +G  +KA    G +LK+G
Sbjct: 459 ASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALLKSG 505



 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
 Frame = -1

Query: 468  RLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGFLPDSVTVA 289
            +L    +L+ EM++ GI PDV  Y I+IH++   G + EA  ++ ++ R GF+P ++   
Sbjct: 560  QLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFT 619

Query: 288  SVVNGYCVRRRLNEAVTV---LKVFGFAANVFVYNSFISKLCWDGDMVQAHELFHEMSEL 118
             V+ G   R    EA  +   +       +V   ++ +   C    M +A  LF ++ + 
Sbjct: 620  DVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDA 679

Query: 117  GIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
            G+ PD   Y T+I GYC VG++ KA  L+G M++ G
Sbjct: 680  GLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRG 715



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 50/189 (26%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
 Frame = -1

Query: 603  NSLIRKLLESKEMELAWGILDEMHIRGMV-NTSIISLFIHELCAEGRLASACKLLVEMQN 427
            N+L+    ++ ++   + ++DEM   G+  + +  ++ IH +   G +  A +++ E+  
Sbjct: 549  NNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIR 608

Query: 426  YGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGFLPDSVTVASVVNGYCVRRRLNE 247
             G  P  +A+T VI  + K G  +EA  + F M      PD VT +++++GYC  +R+ +
Sbjct: 609  RGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEK 668

Query: 246  AVTV---LKVFGFAANVFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIK 76
            A+ +   L   G   +V +YN+ I   C  GD+ +A EL   M + G+ P+  ++  ++ 
Sbjct: 669  AIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVV 728

Query: 75   GYCGVGNLN 49
            G  G   +N
Sbjct: 729  GLEGKRFMN 737



 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 3/224 (1%)
 Frame = -1

Query: 672  LSMALDLVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGILDEMHIRGMVNTSIISLF 493
            L  A  ++ ++ +  I   S   +S+I    +  + E A  ++    +R   N  + S F
Sbjct: 389  LREATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP--NIFVYSSF 446

Query: 492  IHELCAEGRLASACKLLVEMQNYGIKPDVVAYTIVIHAICKMGLLKEATSMLFKMTRTGF 313
            +  +C+ G +  A  +  E+   G+ PD   YT +I   C +G   +A      + ++G 
Sbjct: 447  LSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALLKSGN 506

Query: 312  LPDSVTVASVVNGYCVRRRLNEAVTVLKVF---GFAANVFVYNSFISKLCWDGDMVQAHE 142
             P  +T   ++        +++A +V ++    G   +V  YN+ +        + +  E
Sbjct: 507  PPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFE 566

Query: 141  LFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLVGQMLKNG 10
            L  EM   GI PD  +Y  +I      G +++A  ++ ++++ G
Sbjct: 567  LIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRG 610