BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016523
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281817.1| PREDICTED: uncharacterized protein LOC100241...   135   3e-30
ref|XP_002521842.1| lupus la ribonucleoprotein, putative [Ricinu...   131   7e-29
ref|NP_188540.1| RNA-binding protein [Arabidopsis thaliana] gi|1...   129   2e-28
ref|XP_003608039.1| La-related protein [Medicago truncatula] gi|...   129   2e-28
ref|XP_002883162.1| predicted protein [Arabidopsis lyrata subsp....   129   2e-28

>ref|XP_002281817.1| PREDICTED: uncharacterized protein LOC100241743 [Vitis vinifera]
           gi|297741333|emb|CBI32464.3| unnamed protein product
           [Vitis vinifera]
          Length = 412

 Score =  135 bits (341), Expect = 3e-30
 Identities = 68/109 (62%), Positives = 86/109 (78%)
 Frame = -2

Query: 328 SKKFLNDDLRQKIIKQVEFQFSDMSLLASETLAKHMNKNPEGYXXXXXXXXXXXXXXXVN 149
           SK  L  D++QKIIKQVE+QF+DMSLLAS++LAKH+NK+PEGY               V+
Sbjct: 96  SKNLLTHDIQQKIIKQVEYQFNDMSLLASDSLAKHINKDPEGYVPISVIASSKKVKALVS 155

Query: 148 NNHLLAQALRTSSKLVLTEDGKKVKRKHIFTDRDKEDLQSRVVVAENLP 2
           NN LLAQALR+SS+LV++ DGKKV+RKH+FT+RDKE+LQ+  VVAENLP
Sbjct: 156 NNQLLAQALRSSSQLVVSSDGKKVRRKHLFTERDKEELQAHTVVAENLP 204


>ref|XP_002521842.1| lupus la ribonucleoprotein, putative [Ricinus communis]
           gi|223538880|gb|EEF40478.1| lupus la ribonucleoprotein,
           putative [Ricinus communis]
          Length = 440

 Score =  131 bits (329), Expect = 7e-29
 Identities = 66/105 (62%), Positives = 83/105 (79%)
 Frame = -2

Query: 316 LNDDLRQKIIKQVEFQFSDMSLLASETLAKHMNKNPEGYXXXXXXXXXXXXXXXVNNNHL 137
           L DDLRQKI+KQVE+QF DMSLLA+E+++KH++K+PEGY               VNNNHL
Sbjct: 128 LTDDLRQKILKQVEYQFGDMSLLANESMSKHISKDPEGYVPISVIASTKKMKSLVNNNHL 187

Query: 136 LAQALRTSSKLVLTEDGKKVKRKHIFTDRDKEDLQSRVVVAENLP 2
           LAQAL++SSKLV++ED KKVKRK  FT++D+E+LQSR VV ENLP
Sbjct: 188 LAQALQSSSKLVVSEDNKKVKRKLPFTEKDREELQSRTVVVENLP 232


>ref|NP_188540.1| RNA-binding protein [Arabidopsis thaliana]
           gi|11994567|dbj|BAB02607.1| RNA-binding protein-like
           [Arabidopsis thaliana] gi|332642672|gb|AEE76193.1|
           RNA-binding protein [Arabidopsis thaliana]
          Length = 455

 Score =  129 bits (324), Expect = 2e-28
 Identities = 64/109 (58%), Positives = 84/109 (77%)
 Frame = -2

Query: 328 SKKFLNDDLRQKIIKQVEFQFSDMSLLASETLAKHMNKNPEGYXXXXXXXXXXXXXXXVN 149
           SK  L+DDLR KI+KQVE+QF+DMSLLA+E+++KH++K+PEGY                +
Sbjct: 136 SKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTS 195

Query: 148 NNHLLAQALRTSSKLVLTEDGKKVKRKHIFTDRDKEDLQSRVVVAENLP 2
           N+HL++ ALR+SSKLV++EDGKKVKR   FTDRD+E+LQ R VVAENLP
Sbjct: 196 NHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLP 244


>ref|XP_003608039.1| La-related protein [Medicago truncatula]
           gi|355509094|gb|AES90236.1| La-related protein [Medicago
           truncatula]
          Length = 442

 Score =  129 bits (324), Expect = 2e-28
 Identities = 67/109 (61%), Positives = 80/109 (73%)
 Frame = -2

Query: 328 SKKFLNDDLRQKIIKQVEFQFSDMSLLASETLAKHMNKNPEGYXXXXXXXXXXXXXXXVN 149
           SK  LN DL+QKI+KQVE+QFSD+SLLA+E+  K MNK+PEGY               VN
Sbjct: 91  SKNVLNPDLQQKIVKQVEYQFSDLSLLANESFQKQMNKDPEGYVPITVIASTKKIKSLVN 150

Query: 148 NNHLLAQALRTSSKLVLTEDGKKVKRKHIFTDRDKEDLQSRVVVAENLP 2
           N HLL QA+R SSKLVL+ DGKKVKRKH F +++KE+L SR VVAENLP
Sbjct: 151 NIHLLTQAIRHSSKLVLSADGKKVKRKHPFAEKEKEELMSRTVVAENLP 199


>ref|XP_002883162.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329002|gb|EFH59421.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 455

 Score =  129 bits (324), Expect = 2e-28
 Identities = 64/109 (58%), Positives = 84/109 (77%)
 Frame = -2

Query: 328 SKKFLNDDLRQKIIKQVEFQFSDMSLLASETLAKHMNKNPEGYXXXXXXXXXXXXXXXVN 149
           SK  L+DDLR KI+KQVE+QF+DMSLLA+E+++KH++K+PEGY                +
Sbjct: 136 SKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPISYIASTKKIKALTS 195

Query: 148 NNHLLAQALRTSSKLVLTEDGKKVKRKHIFTDRDKEDLQSRVVVAENLP 2
           N+HL++ ALR+SSKLV++EDGKKVKR   FTDRD+E+LQ R VVAENLP
Sbjct: 196 NHHLVSLALRSSSKLVVSEDGKKVKRTSPFTDRDREELQGRTVVAENLP 244