BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016520
         (699 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containi...   412   e-113
ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containi...   407   e-111
ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|2...   407   e-111
ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containi...   404   e-111
ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containi...   404   e-111

>ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
           gi|296082481|emb|CBI21486.3| unnamed protein product
           [Vitis vinifera]
          Length = 489

 Score =  412 bits (1060), Expect = e-113
 Identities = 198/232 (85%), Positives = 221/232 (95%)
 Frame = -3

Query: 697 VFRWMQKQRWYVADNGVYSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAH 518
           VFRWMQKQRWY+ADNGVYSKLISVMGKKGQ RMAMWLFSEMRNSGCRPDTSVYN+LI+AH
Sbjct: 120 VFRWMQKQRWYIADNGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAH 179

Query: 517 LHSRDKSKALAKALGYFEKMKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESI 338
           LHSRDKSKAL KALGYF+KMKG+ERCKP+IVTYNILLRAFAQA+ V+Q NALFK+L ESI
Sbjct: 180 LHSRDKSKALIKALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESI 239

Query: 337 VSPDIYTYNGVMDAYGKNGMIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKME 158
           VSPDI+T+NGVMDAYGKNGMI+EMESVLS+MKSNQ KPD ITFN+LIDSYGRRQ F+KME
Sbjct: 240 VSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKME 299

Query: 157 QVYKSLLRSREKPTLPTFNSMITNYGKARLKDKAEAVFKKIYEMGYKPSYVT 2
           QV+KSLLRS+EKPTLPTFNSMITNYGKARLK+KAE VFKK+ +MGY P+++T
Sbjct: 300 QVFKSLLRSKEKPTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFIT 351


>ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 503

 Score =  407 bits (1046), Expect = e-111
 Identities = 194/232 (83%), Positives = 221/232 (95%)
 Frame = -3

Query: 697 VFRWMQKQRWYVADNGVYSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAH 518
           VFRWMQKQRWY+ADNG+YSKLISVMGKKGQ RMAMWLFSEMRN+GCRPDTSVYN+LI+AH
Sbjct: 95  VFRWMQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAH 154

Query: 517 LHSRDKSKALAKALGYFEKMKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESI 338
           LHSRDK+KALAKA+GYF+KMKG+ERCKP+IVTYNILLRAFAQAR V+QVN+LFKDL+ESI
Sbjct: 155 LHSRDKTKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESI 214

Query: 337 VSPDIYTYNGVMDAYGKNGMIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKME 158
           VSPDIYT+NGVMDAYGKNGMIREME+VL++MKSNQ KPD ITFNLLIDSYG++Q F KME
Sbjct: 215 VSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKME 274

Query: 157 QVYKSLLRSREKPTLPTFNSMITNYGKARLKDKAEAVFKKIYEMGYKPSYVT 2
           QV+KSLLRS+E+ +LPTFNSMI NYGKARLKDKAE VFK++ +MGY PS+VT
Sbjct: 275 QVFKSLLRSKERASLPTFNSMILNYGKARLKDKAEDVFKRMTDMGYTPSFVT 326



 Score = 65.9 bits (159), Expect = 8e-09
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 31/200 (15%)
 Frame = -3

Query: 646 YSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAH----------------L 515
           ++ ++   GK G IR    + + M+++ C+PD   +N LI ++                L
Sbjct: 222 FNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLL 281

Query: 514 HSRD---------------KSKALAKALGYFEKMKGIERCKPSIVTYNILLRAFAQARKV 380
            S++               K++   KA   F++M  +    PS VT+  L+  +     V
Sbjct: 282 RSKERASLPTFNSMILNYGKARLKDKAEDVFKRMTDMGYT-PSFVTHESLIYMYGFCDCV 340

Query: 379 DQVNALFKDLEESIVSPDIYTYNGVMDAYGKNGMIREMESVLSQMKSNQIKPDAITFNLL 200
            +   LF +L ES     + T N ++D Y  NG+ +E +S+  +  S +I PD+ TF LL
Sbjct: 341 SRAAQLFDELVESKAHIKVSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFKLL 400

Query: 199 IDSYGRRQAFEKMEQVYKSL 140
             +Y +    E ++++ K +
Sbjct: 401 YKAYTKANQKELLDKLLKHM 420


>ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|222855789|gb|EEE93336.1|
           predicted protein [Populus trichocarpa]
          Length = 416

 Score =  407 bits (1045), Expect = e-111
 Identities = 196/232 (84%), Positives = 218/232 (93%)
 Frame = -3

Query: 697 VFRWMQKQRWYVADNGVYSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAH 518
           VFRWMQKQRWYVADNG YSKLISVMGKKGQ RMAMWLFSEMRNSGCRPDTSVYN+LI+AH
Sbjct: 75  VFRWMQKQRWYVADNGCYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAH 134

Query: 517 LHSRDKSKALAKALGYFEKMKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESI 338
           LHS+DK+K+L KAL YFEKMK IERC+P++VTYNI+LRAFAQAR V+QVNALFKDLEESI
Sbjct: 135 LHSKDKAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESI 194

Query: 337 VSPDIYTYNGVMDAYGKNGMIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKME 158
           VSPDIYTYNGV+DAYGKNGMIREMESVLS+MK +Q KPD ITFNLLIDSYG++Q FEKME
Sbjct: 195 VSPDIYTYNGVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKME 254

Query: 157 QVYKSLLRSREKPTLPTFNSMITNYGKARLKDKAEAVFKKIYEMGYKPSYVT 2
           QV+KSLLRS+EKPTLPTFNSMI NYGKARLKDKAE+VFKK+ +M Y PS++T
Sbjct: 255 QVFKSLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFIT 306


>ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 494

 Score =  404 bits (1039), Expect = e-111
 Identities = 192/232 (82%), Positives = 218/232 (93%)
 Frame = -3

Query: 697 VFRWMQKQRWYVADNGVYSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAH 518
           VFRWMQKQRWY+ADNGVYSKLIS+MGKKGQIRMAMWLFSEMRNSGCRPDTSVYN+LI+AH
Sbjct: 113 VFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAH 172

Query: 517 LHSRDKSKALAKALGYFEKMKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESI 338
           LHS+DK+KAL K L YFEKMKG+ERCKP+IVTYNIL RAFAQA KVDQVN LFKDL+ES+
Sbjct: 173 LHSKDKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESV 232

Query: 337 VSPDIYTYNGVMDAYGKNGMIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKME 158
           VS DIYTYNGVMDAYGKNG I+EME +L++MKSNQIKPD I+FNLLIDSYG++Q F+KME
Sbjct: 233 VSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKME 292

Query: 157 QVYKSLLRSREKPTLPTFNSMITNYGKARLKDKAEAVFKKIYEMGYKPSYVT 2
           QV+KSLLRS+E+PTLPTFNSMITNYGKARL++KAE VF+K+ +MGY PSYVT
Sbjct: 293 QVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVT 344



 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 46/192 (23%), Positives = 85/192 (44%)
 Frame = -3

Query: 646 YSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAHLHSRDKSKALAKALGYF 467
           ++ LI   GKK        +F  +  S  RP    +NS+I+ +     K++   KA   F
Sbjct: 275 FNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNY----GKARLREKAEEVF 330

Query: 466 EKMKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESIVSPDIYTYNGVMDAYGK 287
            KMK +    PS VT   L+  +     V +   +F  +  S     + T N ++D Y  
Sbjct: 331 RKMKDMGY-DPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCI 389

Query: 286 NGMIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKMEQVYKSLLRSREKPTLPT 107
           NG+  E + +     + ++ PD+ T+ LL  +Y +    E +E++ K++ ++   P    
Sbjct: 390 NGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKLLKNMDKAGIIPNKRF 449

Query: 106 FNSMITNYGKAR 71
           F   +   G ++
Sbjct: 450 FLDALGTIGSSQ 461


>ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 528

 Score =  404 bits (1039), Expect = e-111
 Identities = 192/232 (82%), Positives = 218/232 (93%)
 Frame = -3

Query: 697 VFRWMQKQRWYVADNGVYSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAH 518
           VFRWMQKQRWY+ADNGVYSKLIS+MGKKGQIRMAMWLFSEMRNSGCRPDTSVYN+LI+AH
Sbjct: 113 VFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAH 172

Query: 517 LHSRDKSKALAKALGYFEKMKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESI 338
           LHS+DK+KAL K L YFEKMKG+ERCKP+IVTYNIL RAFAQA KVDQVN LFKDL+ES+
Sbjct: 173 LHSKDKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESV 232

Query: 337 VSPDIYTYNGVMDAYGKNGMIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKME 158
           VS DIYTYNGVMDAYGKNG I+EME +L++MKSNQIKPD I+FNLLIDSYG++Q F+KME
Sbjct: 233 VSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKME 292

Query: 157 QVYKSLLRSREKPTLPTFNSMITNYGKARLKDKAEAVFKKIYEMGYKPSYVT 2
           QV+KSLLRS+E+PTLPTFNSMITNYGKARL++KAE VF+K+ +MGY PSYVT
Sbjct: 293 QVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVT 344



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 47/194 (24%), Positives = 86/194 (44%)
 Frame = -3

Query: 646 YSKLISVMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAHLHSRDKSKALAKALGYF 467
           ++ LI   GKK        +F  +  S  RP    +NS+I+ +     K++   KA   F
Sbjct: 275 FNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNY----GKARLREKAEEVF 330

Query: 466 EKMKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESIVSPDIYTYNGVMDAYGK 287
            KMK +    PS VT   L+  +     V +   +F  +  S     + T N ++D Y  
Sbjct: 331 RKMKDMGY-DPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCI 389

Query: 286 NGMIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKMEQVYKSLLRSREKPTLPT 107
           NG+  E + +     + ++ PD+ T+ LL  +Y +    E +E++ K++ ++   P    
Sbjct: 390 NGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKLLKNMDKAGIIPNKRF 449

Query: 106 FNSMITNYGKARLK 65
           F   +   G ++ K
Sbjct: 450 FLDALGTIGSSQEK 463