BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016506
         (557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29860.3| unnamed protein product [Vitis vinifera]              245   4e-63
ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containi...   235   4e-60
ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containi...   228   6e-58
ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containi...   228   6e-58
ref|XP_002529617.1| pentatricopeptide repeat-containing protein,...   214   7e-54

>emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  245 bits (625), Expect = 4e-63
 Identities = 112/178 (62%), Positives = 148/178 (83%)
 Frame = -1

Query: 536 LASLLKKCTNMKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHARTVFTQI 357
           +A L++KC +M+ LRQIH+ +L   +P +  +  LC+I+GFCALSP GDI++AR +F+QI
Sbjct: 60  IALLIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQI 119

Query: 356 QNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVVLGFKE 177
           Q PNIFS+NSMIRGCSQ Q PSKEPV L+ K+++ GYPNPN++T+AFVLKAC++V   +E
Sbjct: 120 QRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEE 179

Query: 176 GWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMISGY 3
           G Q+H++VL+ G GSSPFV+TALVNFYAKCE+I LA K+FDEI +RNL+ WSTMISGY
Sbjct: 180 GQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGY 237



 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 59/182 (32%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
 Frame = -1

Query: 536 LASLLKKCTNMKYL---RQIHSHVLKSPL--PPNLKTHLLCQIVGFCALSPSGDINHART 372
           +A +LK C+ +  L   +Q+H++VLKS     P ++T L    V F A     DI  A  
Sbjct: 164 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETAL----VNFYAKCE--DIVLASK 217

Query: 371 VFTQIQNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVV 192
           VF +I + N+ ++++MI G ++I     E + L+  + K G   P+  T+  V+ ACA  
Sbjct: 218 VFDEITDRNLVAWSTMISGYARI-GLVNEALGLFRDMQKAGVV-PDEVTMVSVISACAAS 275

Query: 191 LGFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMI 12
                G  +H+++ +  + +   + TALVN YAKC  I  A+++FD +P ++   WS+MI
Sbjct: 276 GALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMI 335

Query: 11  SG 6
            G
Sbjct: 336 VG 337


>ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  235 bits (599), Expect = 4e-60
 Identities = 108/168 (64%), Positives = 140/168 (83%)
 Frame = -1

Query: 506 MKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 327
           M+ LRQIH+ +L   +P +  +  LC+I+GFCALSP GDI++AR +F+QIQ PNIFS+NS
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60

Query: 326 MIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVVLGFKEGWQIHSHVLR 147
           MIRGCSQ Q PSKEPV L+ K+++ GYPNPN++T+AFVLKAC++V   +EG Q+H++VL+
Sbjct: 61  MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120

Query: 146 FGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMISGY 3
            G GSSPFV+TALVNFYAKCE+I LA K+FDEI +RNL+ WSTMISGY
Sbjct: 121 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGY 168



 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 59/182 (32%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
 Frame = -1

Query: 536 LASLLKKCTNMKYL---RQIHSHVLKSPL--PPNLKTHLLCQIVGFCALSPSGDINHART 372
           +A +LK C+ +  L   +Q+H++VLKS     P ++T L    V F A     DI  A  
Sbjct: 95  MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETAL----VNFYAKCE--DIVLASK 148

Query: 371 VFTQIQNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVV 192
           VF +I + N+ ++++MI G ++I     E + L+  + K G   P+  T+  V+ ACA  
Sbjct: 149 VFDEITDRNLVAWSTMISGYARI-GLVNEALGLFRDMQKAGVV-PDEVTMVSVISACAAS 206

Query: 191 LGFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMI 12
                G  +H+++ +  + +   + TALVN YAKC  I  A+++FD +P ++   WS+MI
Sbjct: 207 GALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMI 266

Query: 11  SG 6
            G
Sbjct: 267 VG 268


>ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 376

 Score =  228 bits (580), Expect = 6e-58
 Identities = 108/168 (64%), Positives = 135/168 (80%)
 Frame = -1

Query: 506 MKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 327
           M+ LRQ+H+H+L  PLP +     L +IV FCALSP G+IN+AR+VF QI +PNIFS+NS
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 326 MIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVVLGFKEGWQIHSHVLR 147
           +I+G SQI   SKEP+FL+ KL +TGYP PNS+TLAFVLKACA+V  F EG Q+HSHVL+
Sbjct: 61  LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120

Query: 146 FGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMISGY 3
            G GSS FVQT+LVNFY KCEEIG ARK+F+E+P RNL+ W+ MISG+
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGH 168



 Score = 79.0 bits (193), Expect = 5e-13
 Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 4/182 (2%)
 Frame = -1

Query: 536 LASLLKKCTNMKYLR---QIHSHVLKSPLPPNLKTHL-LCQIVGFCALSPSGDINHARTV 369
           LA +LK C  +       Q+HSHVLK     +L     L    G C      +I  AR V
Sbjct: 95  LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCE-----EIGFARKV 149

Query: 368 FTQIQNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVVL 189
           F ++   N+ ++ +MI G +++     E + L+ ++ K G   P++ TL  V+ ACAV  
Sbjct: 150 FEEMPVRNLVAWTAMISGHARV-GAVDEAMELFREMQKAGI-QPDAMTLVSVVSACAVAG 207

Query: 188 GFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMIS 9
               G  +H+++ ++ + +   + TALV+ YAKC  I  A+++F  +P ++   WS+MI 
Sbjct: 208 ALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIM 267

Query: 8   GY 3
           G+
Sbjct: 268 GF 269


>ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  228 bits (580), Expect = 6e-58
 Identities = 108/168 (64%), Positives = 135/168 (80%)
 Frame = -1

Query: 506 MKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 327
           M+ LRQ+H+H+L  PLP +     L +IV FCALSP G+IN+AR+VF QI +PNIFS+NS
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 326 MIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVVLGFKEGWQIHSHVLR 147
           +I+G SQI   SKEP+FL+ KL +TGYP PNS+TLAFVLKACA+V  F EG Q+HSHVL+
Sbjct: 61  LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120

Query: 146 FGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMISGY 3
            G GSS FVQT+LVNFY KCEEIG ARK+F+E+P RNL+ W+ MISG+
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGH 168



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 4/182 (2%)
 Frame = -1

Query: 536 LASLLKKCTNMKYLR---QIHSHVLKSPLPPNLKTHL-LCQIVGFCALSPSGDINHARTV 369
           LA +LK C  +       Q+HSHVLK     +L     L    G C      +I  AR V
Sbjct: 95  LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCE-----EIGFARKV 149

Query: 368 FTQIQNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVVL 189
           F ++   N+ ++ +MI G +++     E + L+ ++ K G   P++ TL  V+ ACAV  
Sbjct: 150 FEEMPVRNLVAWTAMISGHARV-GAVDEAMELFREMQKAGI-QPDAMTLVSVVSACAVAG 207

Query: 188 GFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMIS 9
               G+ +H+++ ++ + +   + TALV+ YAKC  I  A+++F  +P ++   WS+MI 
Sbjct: 208 ALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIM 267

Query: 8   GY 3
           G+
Sbjct: 268 GF 269


>ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530902|gb|EEF32762.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 438

 Score =  214 bits (545), Expect = 7e-54
 Identities = 98/178 (55%), Positives = 135/178 (75%)
 Frame = -1

Query: 536 LASLLKKCTNMKYLRQIHSHVLKSPLPPNLKTHLLCQIVGFCALSPSGDINHARTVFTQI 357
           +ASL++KC N+ +LRQIH+ +L   LP    + LL +I+ F ALSP GD+N+AR +F QI
Sbjct: 131 IASLIQKCPNLHFLRQIHARILTRLLPIPTISFLLSKILSFSALSPLGDLNYARKIFAQI 190

Query: 356 QNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVVLGFKE 177
            NP IF YN++IRGCS  +NPS+EP FLY  ++  G+P  N++T+AFVLKACA ++ F+E
Sbjct: 191 PNPGIFPYNTIIRGCSYAKNPSREPYFLYKSMVTRGFPRANTFTMAFVLKACASIMAFEE 250

Query: 176 GWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMISGY 3
           G QIH+ +LR G   +P+VQ++LV+ Y KCEEI LA+++FDEI ERNL+ WS MISGY
Sbjct: 251 GRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGY 308



 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 54/182 (29%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
 Frame = -1

Query: 536 LASLLKKCTNMKYL---RQIHSHVLKS--PLPPNLKTHLLCQIVGFCALSPSGDINHART 372
           +A +LK C ++      RQIH+ +L+S   L P +++ L+  + G C      +I  A+ 
Sbjct: 235 MAFVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLV-SLYGKCE-----EIRLAKQ 288

Query: 371 VFTQIQNPNIFSYNSMIRGCSQIQNPSKEPVFLYHKLIKTGYPNPNSYTLAFVLKACAVV 192
           VF +I   N+  +++MI G +++     E + ++ ++ + G   P+  +L  V+ ACA+ 
Sbjct: 289 VFDEITERNLVCWSAMISGYARV-GMVNEALSMFREMQEVGI-EPDEVSLVGVISACAMA 346

Query: 191 LGFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMI 12
                G  IH+++ +  +     + TALVN YAKC  I  A+++FD +P ++   WS+MI
Sbjct: 347 GALDIGRWIHAYIKKRMIHIDLELNTALVNMYAKCGCIEKAKEIFDYMPVKDSKAWSSMI 406

Query: 11  SG 6
            G
Sbjct: 407 VG 408