BLASTX nr result
ID: Coptis24_contig00016492
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00016492
(835 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002515369.1| DNA binding protein, putative [Ricinus commu... 150 3e-34
ref|XP_002893387.1| T24P13.6 [Arabidopsis lyrata subsp. lyrata] ... 140 3e-31
ref|NP_567162.2| putative B3 domain-containing protein REM15 [Ar... 137 2e-30
gb|AAO22760.1| unknown protein [Arabidopsis thaliana] 137 4e-30
gb|AAF87027.1|AC006535_5 T24P13.6 [Arabidopsis thaliana] 136 5e-30
>ref|XP_002515369.1| DNA binding protein, putative [Ricinus communis]
gi|223545313|gb|EEF46818.1| DNA binding protein,
putative [Ricinus communis]
Length = 368
Score = 150 bits (380), Expect = 3e-34
Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Frame = -2
Query: 810 KPRFFKVIVPCSLKEISIPPAFKSRHLKENCSEGNVTLRTNRSSKCWAVSMKGFWFREGW 631
KP FF+ ++P E SIP +F +HLK N E + + + + K W V + G F +GW
Sbjct: 5 KPHFFQPVLPGFEDEPSIPVSF-FKHLKGNRRE--IAVLRSTAGKLWHVKINGRRFEDGW 61
Query: 630 EDFARAHDLCIGDFLVFKHEGGLKFHVRIFDPTACEKEYPLLDV---VGSDDEKMEKVQT 460
+DFA+ HDL IGDFLVF+HEG + F+V +FDP+ACE+EY +V + + +E+ E +T
Sbjct: 62 KDFAKYHDLHIGDFLVFRHEGDMVFYVMVFDPSACEREYTSFNVKEEMETSEEEKEPAKT 121
Query: 459 KEKNKKFTKNSP--SSKVTRMAREVKEPPHFAVTLRAYN-------------FKGSIMYI 325
+ +KFTKN S + V E PHFAV + +Y FK + I
Sbjct: 122 SDL-RKFTKNKQIMISVEGKGNPPVFENPHFAVNMTSYTASHPRKPLKFIYLFKQN---I 177
Query: 324 PAKFGRDNGLTNRAEVMTLKDPIGKAWKVYLRYKPSQGMCYIRNDWLHFADSNKLKLGDG 145
P KF NGL NR + L D ++W L YK + G Y+++ W F +N LK GD
Sbjct: 178 PKKFAEANGLYNRYCKIVLVDQESRSWLADLGYKKADGTVYVKDGWSTFCIANDLKKGDS 237
Query: 144 CTFKLL 127
F+L+
Sbjct: 238 FIFELI 243
>ref|XP_002893387.1| T24P13.6 [Arabidopsis lyrata subsp. lyrata]
gi|297339229|gb|EFH69646.1| T24P13.6 [Arabidopsis lyrata
subsp. lyrata]
Length = 1003
Score = 140 bits (354), Expect = 3e-31
Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 2/234 (0%)
Frame = -2
Query: 816 PRKPRFFKVIVPCSLKEISIPPAFKSRHLKENCSEGNVT-LRTNRSSKCWAVSMKGFWFR 640
P KP FFK ++ ++IP AF S+H++ + + LR++ S K W V M G
Sbjct: 10 PIKPHFFKPLLQGFRTHLNIPVAFFSKHVEGKNDQNKIAKLRSDASEKTWLVKMDGLNLT 69
Query: 639 EGWEDFARAHDLCIGDFLVFKHEGGLKFHVRIFDPTACEKEYPLLDVVGSDDEKMEKVQT 460
+GWEDFA AHDL IGD ++F+HEG + FHV P+ CE +Y +DD++ ++
Sbjct: 70 DGWEDFAFAHDLRIGDIVIFRHEGEMVFHVTALGPSCCEIQYYTSSHNSNDDDRNDQTNI 129
Query: 459 KEKNKKFTKNSPSSKVTRMAREVKEPPHFAVTLRAYNFKGSIMYIPAKFGRDNGLTN-RA 283
+N + K +P KV + F + A+ + +YIP F R NGL +
Sbjct: 130 ASRNSERVKKNPRKKV----ESSLDHSRFVAKVSAWGLRNDRLYIPLSFARSNGLNKINS 185
Query: 282 EVMTLKDPIGKAWKVYLRYKPSQGMCYIRNDWLHFADSNKLKLGDGCTFKLLSR 121
+ + L + G++WK+ L++ S YI++ W F +N ++ G TFKL+ +
Sbjct: 186 KKIYLYNEAGRSWKLDLKHDKSGMHTYIQSGWRSFCAANGIRQGQ-YTFKLVRK 238
>ref|NP_567162.2| putative B3 domain-containing protein REM15 [Arabidopsis thaliana]
gi|238065256|sp|O23076.2|REM15_ARATH RecName:
Full=Putative B3 domain-containing protein REM15;
AltName: Full=Protein REPRODUCTIVE MERISTEM 15
gi|332656447|gb|AEE81847.1| putative B3
domain-containing protein REM15 [Arabidopsis thaliana]
Length = 528
Score = 137 bits (346), Expect = 2e-30
Identities = 75/227 (33%), Positives = 119/227 (52%)
Frame = -2
Query: 801 FFKVIVPCSLKEISIPPAFKSRHLKENCSEGNVTLRTNRSSKCWAVSMKGFWFREGWEDF 622
FFK ++P ++IP AF ++++ + LR++ S + W V + G +GW++F
Sbjct: 6 FFKPLLPGFHASLTIPVAFFLKYIEGRYEQKTAKLRSDASKRTWEVKIDGQRLTDGWKEF 65
Query: 621 ARAHDLCIGDFLVFKHEGGLKFHVRIFDPTACEKEYPLLDVVGSDDEKMEKVQTKEKNKK 442
A +HDL IGD +VF+ E L FHV + P+ C +Y V EK ++ KK
Sbjct: 66 AVSHDLRIGDIVVFRQESDLAFHVTLLGPSCCGIQYGSCSV--------EKNNLGDEKKK 117
Query: 441 FTKNSPSSKVTRMAREVKEPPHFAVTLRAYNFKGSIMYIPAKFGRDNGLTNRAEVMTLKD 262
K +P+ + +R +P F + + + +M P F RDNG+ E++ + +
Sbjct: 118 -VKENPNGEAESSSR---DPSCFVANVAPSSLRYDLMRFPRGFVRDNGVVGSGEIVLMNE 173
Query: 261 PIGKAWKVYLRYKPSQGMCYIRNDWLHFADSNKLKLGDGCTFKLLSR 121
G++W LR KPS G Y+R W+ F D+N LK GD TFKL+ R
Sbjct: 174 K-GRSWNFNLRQKPSNGTVYVRGGWVSFCDANGLKAGDNYTFKLIKR 219
Score = 81.3 bits (199), Expect = 3e-13
Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 5/181 (2%)
Frame = -2
Query: 648 WFREGWEDFARAHDLCIGD---FLVFKHEGGLKFHVRIFDPTACEKEYPLLDVVGSDDEK 478
+ R GW F A+ L GD F + K G L + +P E L + SD E+
Sbjct: 192 YVRGGWVSFCDANGLKAGDNYTFKLIKRAGTLVLRLLPNEPKEEANEVSLPEEPESDAER 251
Query: 477 -MEKVQTKEKNKKFTKNSPSSKVTRMAREVKEPPH-FAVTLRAYNFKGSIMYIPAKFGRD 304
+EK+Q KEK KK VTR A + P F + + + +Y+P +F R+
Sbjct: 252 NLEKIQRKEKVKK--------NVTREAESSSQDPSCFVANVSPSSLRYDTLYLPKRFMRE 303
Query: 303 NGLTNRAEVMTLKDPIGKAWKVYLRYKPSQGMCYIRNDWLHFADSNKLKLGDGCTFKLLS 124
NG+ R M L + GK+W + L+ K S G I+ W F +N L+ G T KL+
Sbjct: 304 NGVDKRCGEMILINEKGKSWTLDLKVKKSSGTSLIKRGWRSFCSANGLRAGSIITLKLIK 363
Query: 123 R 121
+
Sbjct: 364 K 364
>gb|AAO22760.1| unknown protein [Arabidopsis thaliana]
Length = 920
Score = 137 bits (344), Expect = 4e-30
Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 2/234 (0%)
Frame = -2
Query: 816 PRKPRFFKVIVPCSLKEISIPPAFKSRHLK-ENCSEGNVTLRTNRSSKCWAVSMKGFWFR 640
P P FF+ I+ S ++IP AF S+H++ N VTLR++ S K W V M G
Sbjct: 10 PINPHFFQPILTESRTHLNIPVAFFSKHVEGRNNQNKTVTLRSDASDKTWLVKMDGLKLT 69
Query: 639 EGWEDFARAHDLCIGDFLVFKHEGGLKFHVRIFDPTACEKEYPLLDVVGSDDEKMEKVQT 460
+GWEDFA AHDL GD +VF+ EG + FHV P+ CE +Y +DD++ +++
Sbjct: 70 DGWEDFAFAHDLRTGDIVVFRLEGEMVFHVTALGPSCCEIQYHTSSHNINDDDRNDQINI 129
Query: 459 KEKNKKFTKNSPSSKVTRMAREVKEPPHFAVTLRAYNFKGSIMYIPAKFGRDNGLTN-RA 283
+N K +P KV + F + A+ +YIP F R NGL +
Sbjct: 130 ASRNSSRVKKNPRKKV----ESSLDHSRFVAKVSAWCLSNDRLYIPLSFARLNGLNKINS 185
Query: 282 EVMTLKDPIGKAWKVYLRYKPSQGMCYIRNDWLHFADSNKLKLGDGCTFKLLSR 121
+ + L++ G++WK+ LR+ S ++++ W F N ++ G TFKL+ +
Sbjct: 186 KKIYLQNEEGRSWKLVLRHDKSGTQTFVQSGWRRFCSENGIRQGQ-YTFKLVRK 238
Score = 60.5 bits (145), Expect = 5e-07
Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 30/251 (11%)
Frame = -2
Query: 789 IVPCSLKE--ISIPPAF-KSRHLKENCSEGNVTLRTNRSSKCWAVSMKGF----WFREGW 631
+ P SL+ + +P +F S L + CSE + L+ + K W + +K F + +GW
Sbjct: 272 VTPSSLRNDLLYLPRSFVNSNRLDKRCSE--IVLKNEQGVK-WPLVLKRFKSVTYLPKGW 328
Query: 630 EDFARAHDLCIGDFLVFKHEGGLKFHVRIFDPTACEK-EYPLLDVVGSDDEKMEKVQTKE 454
F + + + GD FK G K V PT + PL G+ E+ E+ +
Sbjct: 329 TSFCQVNRIKAGDSFKFKLVGTWKKPVLSLCPTQSNNHKTPLECSEGNKSEESEEDCLEV 388
Query: 453 KNKKF---------------TKNSPSSKVTRMAREVKEPPH-------FAVTLRAYNFKG 340
K KK+ T SS+ R+++ +E F ++ +
Sbjct: 389 KKKKYWSRCRASVENMDDDQTNIGNSSRKKRVSKNPREKVESSSDHSSFVGSVNPSSLYK 448
Query: 339 SIMYIPAKFGRDNGLTNRAEVMTLKDPIGKAWKVYLRYKPSQGMCYIRNDWLHFADSNKL 160
+Y+P F N L R + LK+ G+ + L++ + + +++ W F N++
Sbjct: 449 DQLYLPRNFVSSNFLDKRCSEIVLKNERGEKRTLVLKHF-KKDLTFLKKGWTSFCQVNRI 507
Query: 159 KLGDGCTFKLL 127
K GD FKL+
Sbjct: 508 KAGDSFKFKLV 518
>gb|AAF87027.1|AC006535_5 T24P13.6 [Arabidopsis thaliana]
Length = 984
Score = 136 bits (343), Expect = 5e-30
Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 2/234 (0%)
Frame = -2
Query: 816 PRKPRFFKVIVPCSLKEISIPPAFKSRHLK-ENCSEGNVTLRTNRSSKCWAVSMKGFWFR 640
P P FF+ I+ S ++IP AF S+H++ N VTLR++ S K W V M G
Sbjct: 10 PINPHFFQPILTESRTHLNIPVAFFSKHVEGRNNQNKTVTLRSDASDKTWLVKMDGLKLT 69
Query: 639 EGWEDFARAHDLCIGDFLVFKHEGGLKFHVRIFDPTACEKEYPLLDVVGSDDEKMEKVQT 460
+GWEDFA AHDL GD +VF+ EG + FHV P+ CE +Y +DD++ +++
Sbjct: 70 DGWEDFAFAHDLRTGDIVVFRLEGEMVFHVTALGPSCCEIQYHTSSHNINDDDRNDQINI 129
Query: 459 KEKNKKFTKNSPSSKVTRMAREVKEPPHFAVTLRAYNFKGSIMYIPAKFGRDNGLTN-RA 283
+N K +P KV + F + A+ +YIP F R NGL +
Sbjct: 130 ASRNSSRVKKNPRKKV----ESSLDHSRFVAKVSAWCLSNDRLYIPLSFARLNGLNKINS 185
Query: 282 EVMTLKDPIGKAWKVYLRYKPSQGMCYIRNDWLHFADSNKLKLGDGCTFKLLSR 121
+ + L++ G++WK+ LR+ S ++++ W F N ++ G TFKL+ +
Sbjct: 186 KKIYLQNEEGRSWKLVLRHDKSGMQTFVQSGWRRFCSENGIRQGQ-YTFKLVRK 238
Score = 60.5 bits (145), Expect = 5e-07
Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 30/251 (11%)
Frame = -2
Query: 789 IVPCSLKE--ISIPPAF-KSRHLKENCSEGNVTLRTNRSSKCWAVSMKGF----WFREGW 631
+ P SL+ + +P +F S L + CSE + L+ + K W + +K F + +GW
Sbjct: 272 VTPSSLRNDLLYLPRSFVNSNRLDKRCSE--IVLKNEQGVK-WPLVLKRFKSVTYLPKGW 328
Query: 630 EDFARAHDLCIGDFLVFKHEGGLKFHVRIFDPTACEK-EYPLLDVVGSDDEKMEKVQTKE 454
F + + + GD FK G K V PT + PL G+ E+ E+ +
Sbjct: 329 TSFCQVNRIKAGDSFKFKLVGTWKKPVLSLCPTQSNNHKTPLECSEGNKSEESEEDCLEV 388
Query: 453 KNKKF---------------TKNSPSSKVTRMAREVKEPPH-------FAVTLRAYNFKG 340
K KK+ T SS+ R+++ +E F ++ +
Sbjct: 389 KKKKYWSRCRASVENMDDDQTNIGNSSRKKRVSKNPREKVESSSDHSSFVGSVNPSSLYK 448
Query: 339 SIMYIPAKFGRDNGLTNRAEVMTLKDPIGKAWKVYLRYKPSQGMCYIRNDWLHFADSNKL 160
+Y+P F N L R + LK+ G+ + L++ + + +++ W F N++
Sbjct: 449 DQLYLPRNFVSSNFLDKRCSEIVLKNERGEKRTLVLKHF-KKDLTFLKKGWTSFCQVNRI 507
Query: 159 KLGDGCTFKLL 127
K GD FKL+
Sbjct: 508 KAGDSFKFKLV 518