BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016437
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281078.1| PREDICTED: ribonuclease H2 subunit B [Vitis ...   178   4e-43
emb|CAN79021.1| hypothetical protein VITISV_009443 [Vitis vinifera]   178   4e-43
ref|XP_002517803.1| conserved hypothetical protein [Ricinus comm...   158   4e-37
ref|XP_004138774.1| PREDICTED: ribonuclease H2 subunit B-like [C...   154   7e-36
ref|XP_002333390.1| predicted protein [Populus trichocarpa] gi|2...   152   2e-35

>ref|XP_002281078.1| PREDICTED: ribonuclease H2 subunit B [Vitis vinifera]
           gi|296081827|emb|CBI20832.3| unnamed protein product
           [Vitis vinifera]
          Length = 277

 Score =  178 bits (452), Expect = 4e-43
 Identities = 90/143 (62%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
 Frame = +2

Query: 2   MLAVCEMKEVGFSKFFRLNDSKVLAWLCYKVHQLKLTLSALDKNYAAQDEKDVLTEAVSL 181
           M  VCE+KE+G SKFFRL+DSKVLAWLCYKVHQLK  L  LDKNYAA+D+KD LT+A+S+
Sbjct: 130 MQVVCEIKEIGSSKFFRLDDSKVLAWLCYKVHQLKQILPTLDKNYAARDKKDTLTDAISI 189

Query: 182 LGEYLNDEPWLKLLCSHLRLDLQEATKSTPFQEILPSAPESTPGSFIAQQVKSACQKKTY 361
           LGEYL DEPWLKLLC HL+L+L +AT      E  P+AP+++ GS    Q KS  ++KT 
Sbjct: 190 LGEYLEDEPWLKLLCDHLKLNLLDATMKASVIEFHPTAPDNSLGSSNQLQGKSGNERKTT 249

Query: 362 --GRQAKKMKPETDSRNIKDMFT 424
             G+Q KK K E DSRNIKDMF+
Sbjct: 250 RPGKQPKKAKVEKDSRNIKDMFS 272


>emb|CAN79021.1| hypothetical protein VITISV_009443 [Vitis vinifera]
          Length = 277

 Score =  178 bits (452), Expect = 4e-43
 Identities = 90/143 (62%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
 Frame = +2

Query: 2   MLAVCEMKEVGFSKFFRLNDSKVLAWLCYKVHQLKLTLSALDKNYAAQDEKDVLTEAVSL 181
           M  VCE+KE+G SKFFRL+DSKVLAWLCYKVHQLK  L  LDKNYAA+D+KD LT+A+S+
Sbjct: 130 MQVVCEIKEIGSSKFFRLDDSKVLAWLCYKVHQLKQILPTLDKNYAARDKKDTLTDAISI 189

Query: 182 LGEYLNDEPWLKLLCSHLRLDLQEATKSTPFQEILPSAPESTPGSFIAQQVKSACQKKTY 361
           LGEYL DEPWLKLLC HL+L+L +AT      E  P+AP+++ GS    Q KS  ++KT 
Sbjct: 190 LGEYLEDEPWLKLLCDHLKLNLLDATMKAXVIEFHPTAPDNSLGSSNQLQGKSGNERKTT 249

Query: 362 --GRQAKKMKPETDSRNIKDMFT 424
             G+Q KK K E DSRNIKDMF+
Sbjct: 250 RPGKQPKKAKVEKDSRNIKDMFS 272


>ref|XP_002517803.1| conserved hypothetical protein [Ricinus communis]
           gi|223543075|gb|EEF44610.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 299

 Score =  158 bits (400), Expect = 4e-37
 Identities = 84/143 (58%), Positives = 102/143 (71%), Gaps = 2/143 (1%)
 Frame = +2

Query: 2   MLAVCEMKEVGFSKFFRLNDSKVLAWLCYKVHQLKLTLSALDKNYAAQDEKDVLTEAVSL 181
           M  VCE+KE+G SKFFRLNDSKV AWL  KV QLK  +S+LDKNYAAQDEK+ L +A+ +
Sbjct: 153 MQVVCEIKEIGSSKFFRLNDSKVFAWLLCKVSQLKQAVSSLDKNYAAQDEKNTLADAIMI 212

Query: 182 LGEYLNDEPWLKLLCSHLRLDLQEATKSTPFQEILPSAPESTPGSFIAQQVKSACQKKT- 358
           LGEYL DEPWLKLLC+HL+L+L EAT+  P  E   S  E+ P S    Q K     KT 
Sbjct: 213 LGEYLKDEPWLKLLCNHLKLNLLEATRKVPDAE--TSLTENNPASSNLMQEKGKNDGKTK 270

Query: 359 -YGRQAKKMKPETDSRNIKDMFT 424
             G+QAKK K ET+S NI++MF+
Sbjct: 271 RTGKQAKKAKVETESLNIREMFS 293


>ref|XP_004138774.1| PREDICTED: ribonuclease H2 subunit B-like [Cucumis sativus]
           gi|449499524|ref|XP_004160839.1| PREDICTED: ribonuclease
           H2 subunit B-like [Cucumis sativus]
          Length = 281

 Score =  154 bits (389), Expect = 7e-36
 Identities = 81/145 (55%), Positives = 102/145 (70%), Gaps = 4/145 (2%)
 Frame = +2

Query: 2   MLAVCEMKEVGFSKFFRLNDSKVLAWLCYKVHQLKLTLSALDKNYAAQDEKDVLTEAVSL 181
           M  VCE+KEVG S+FFRL+DSKVLAWL +KV QLK TL  LDKNYAA++EK+ L +AVS+
Sbjct: 130 MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETLCDAVSI 189

Query: 182 LGEYLNDEPWLKLLCSHLRLDLQEATKSTPFQEILPSAPESTPGSF----IAQQVKSACQ 349
           LGEYL D+PWLKLLC HL+L+  EAT+     E  P++ E+   S        +  S  +
Sbjct: 190 LGEYLKDQPWLKLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAK 249

Query: 350 KKTYGRQAKKMKPETDSRNIKDMFT 424
               G+QAKK K ET+SRNIKDMF+
Sbjct: 250 NTRNGKQAKKPKVETESRNIKDMFS 274


>ref|XP_002333390.1| predicted protein [Populus trichocarpa] gi|222836425|gb|EEE74832.1|
           predicted protein [Populus trichocarpa]
          Length = 551

 Score =  152 bits (385), Expect = 2e-35
 Identities = 81/142 (57%), Positives = 99/142 (69%), Gaps = 2/142 (1%)
 Frame = +2

Query: 2   MLAVCEMKEVGFSKFFRLNDSKVLAWLCYKVHQLKLTLSALDKNYAAQDEKDVLTEAVSL 181
           M  VCE+KE+G SKFFRL+DSKVLAWL  KV QLK  L +LDKNYAAQDEK  L  AVS+
Sbjct: 403 MGVVCEIKEIGSSKFFRLDDSKVLAWLYCKVFQLKKALCSLDKNYAAQDEKYTLAGAVSI 462

Query: 182 LGEYLNDEPWLKLLCSHLRLDLQEATKSTPFQEILPSAPESTP--GSFIAQQVKSACQKK 355
           LGEY+ DEPWL LL  HL+L+L E T   P  E  P+  E  P   S + ++ +S  + K
Sbjct: 463 LGEYVKDEPWLMLLLDHLKLNLLEVTSKVPEAENFPTNAEHNPVSSSLLQEKDRSEDKTK 522

Query: 356 TYGRQAKKMKPETDSRNIKDMF 421
             G+QAKK K ET+SRNI++MF
Sbjct: 523 RSGKQAKKAKVETESRNIREMF 544