BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016405
         (400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263...   144   1e-32
ref|XP_002888602.1| hypothetical protein ARALYDRAFT_894489 [Arab...   130   1e-28
gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from...   126   2e-27
gb|AAG52299.1|AC011020_6 putative DNA polymerase zeta catalytic ...   126   2e-27
ref|NP_176917.2| DNA polymerase zeta subunit [Arabidopsis thalia...   126   2e-27

>ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera]
          Length = 2002

 Score =  144 bits (362), Expect = 1e-32
 Identities = 81/131 (61%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
 Frame = -3

Query: 392 LETFVLLRGNQGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEIQGG 213
           LE FVL R N  E  QR LD ISGC V+V  EEK LF  F+ I+ S DPDIL+GW+IQGG
Sbjct: 354 LEVFVLCRSNI-EPCQRKLDGISGCKVLVSSEEKLLFDDFINIICSFDPDILIGWDIQGG 412

Query: 212 SLGFLAERAAHLGILLLSTISRTPS-CETEARNSATGEIRVQEYLLPEALVTDPGVFGNT 36
           SLGFLAERA+HLGI LL+ ISRTPS  +T +RN    E RV + +LPE LV D  +    
Sbjct: 413 SLGFLAERASHLGIGLLNKISRTPSETKTASRNFEIPEKRVADEMLPENLVDDSVLLEEA 472

Query: 35  IIEDEWGRTHA 3
           IIEDEWGRTHA
Sbjct: 473 IIEDEWGRTHA 483


>ref|XP_002888602.1| hypothetical protein ARALYDRAFT_894489 [Arabidopsis lyrata subsp.
            lyrata] gi|297334443|gb|EFH64861.1| hypothetical protein
            ARALYDRAFT_894489 [Arabidopsis lyrata subsp. lyrata]
          Length = 1899

 Score =  130 bits (326), Expect = 1e-28
 Identities = 69/129 (53%), Positives = 87/129 (67%)
 Frame = -3

Query: 389  ETFVLLRGNQGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEIQGGS 210
            E FVLL        QRN+D +SGC   V LEE+ LF +F++ +   DPDIL+GW+IQGGS
Sbjct: 1082 EVFVLLVSPDSID-QRNVDGLSGCKFSVFLEERQLFSYFIETLCKWDPDILLGWDIQGGS 1140

Query: 209  LGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQEYLLPEALVTDPGVFGNTII 30
            +GFLAERAA LGI  L+ ISRTPS  T  RN +  + ++ + LLP+ LV DP      +I
Sbjct: 1141 IGFLAERAAQLGIRFLNNISRTPSPTT--RNDSDNKRKLGKNLLPDPLVADPAQVEEVVI 1198

Query: 29   EDEWGRTHA 3
            EDEWGRTHA
Sbjct: 1199 EDEWGRTHA 1207


>gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from S. cerevisiae
            [Arabidopsis thaliana]
          Length = 1894

 Score =  126 bits (316), Expect = 2e-27
 Identities = 66/129 (51%), Positives = 87/129 (67%)
 Frame = -3

Query: 389  ETFVLLRGNQGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEIQGGS 210
            E FVLL        QRN+D +SGC + V LEE+ LF +F++ +   DPD+L+GW+IQGGS
Sbjct: 1077 EVFVLLFSPDSID-QRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGS 1135

Query: 209  LGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQEYLLPEALVTDPGVFGNTII 30
            +GFLAERAA LGI  L+ ISRTPS  T   N++  + ++   LLP+ LV +P      +I
Sbjct: 1136 IGFLAERAAQLGIRFLNNISRTPSPTT--TNNSDNKRKLGNNLLPDPLVANPAQVEEVVI 1193

Query: 29   EDEWGRTHA 3
            EDEWGRTHA
Sbjct: 1194 EDEWGRTHA 1202


>gb|AAG52299.1|AC011020_6 putative DNA polymerase zeta catalytic subunit [Arabidopsis thaliana]
          Length = 1871

 Score =  126 bits (316), Expect = 2e-27
 Identities = 66/129 (51%), Positives = 87/129 (67%)
 Frame = -3

Query: 389  ETFVLLRGNQGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEIQGGS 210
            E FVLL        QRN+D +SGC + V LEE+ LF +F++ +   DPD+L+GW+IQGGS
Sbjct: 1077 EVFVLLFSPDSID-QRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGS 1135

Query: 209  LGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQEYLLPEALVTDPGVFGNTII 30
            +GFLAERAA LGI  L+ ISRTPS  T   N++  + ++   LLP+ LV +P      +I
Sbjct: 1136 IGFLAERAAQLGIRFLNNISRTPSPTT--TNNSDNKRKLGNNLLPDPLVANPAQVEEVVI 1193

Query: 29   EDEWGRTHA 3
            EDEWGRTHA
Sbjct: 1194 EDEWGRTHA 1202


>ref|NP_176917.2| DNA polymerase zeta subunit [Arabidopsis thaliana]
            gi|34330129|dbj|BAC82450.1| catalytic subunit of
            polymerase zeta [Arabidopsis thaliana]
            gi|332196534|gb|AEE34655.1| DNA polymerase zeta subunit
            [Arabidopsis thaliana]
          Length = 1890

 Score =  126 bits (316), Expect = 2e-27
 Identities = 66/129 (51%), Positives = 87/129 (67%)
 Frame = -3

Query: 389  ETFVLLRGNQGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEIQGGS 210
            E FVLL        QRN+D +SGC + V LEE+ LF +F++ +   DPD+L+GW+IQGGS
Sbjct: 1073 EVFVLLFSPDSID-QRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGS 1131

Query: 209  LGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQEYLLPEALVTDPGVFGNTII 30
            +GFLAERAA LGI  L+ ISRTPS  T   N++  + ++   LLP+ LV +P      +I
Sbjct: 1132 IGFLAERAAQLGIRFLNNISRTPSPTT--TNNSDNKRKLGNNLLPDPLVANPAQVEEVVI 1189

Query: 29   EDEWGRTHA 3
            EDEWGRTHA
Sbjct: 1190 EDEWGRTHA 1198