BLASTX nr result
ID: Coptis24_contig00016325
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00016325
(716 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containi... 403 e-110
emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera] 403 e-110
ref|XP_002315827.1| predicted protein [Populus trichocarpa] gi|2... 394 e-107
ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containi... 387 e-105
ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containi... 382 e-104
>ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Vitis vinifera]
Length = 709
Score = 403 bits (1035), Expect = e-110
Identities = 190/238 (79%), Positives = 218/238 (91%)
Frame = -1
Query: 716 HQENYAHQPQTFNEMIDILSSTKYKVKQFRIVCDLLDYMKRNDKNTVPVDVLLVILRKYT 537
HQ+ Y+H+P+ +NEMIDILSSTKYKVKQFRIVCD+LDYMKRNDK +VPV+VLL+ILRKYT
Sbjct: 292 HQDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYT 351
Query: 536 EKHLAHLQKFTHKKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTRVKPDANT 357
EKHLAHL KF KKKIRVKTQPEINA NLLLD++CKC LVE+AQ MF++VK +VKPDANT
Sbjct: 352 EKHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANT 411
Query: 356 YNILFFGWCRVRNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMR 177
YNILFFGWCRVRNP+RGM+VLEEMI++GHTPD+FTY TAID+FC AGMV+EA LFEFMR
Sbjct: 412 YNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMR 471
Query: 176 TRGSTMSSPTAKTYAIMIVALAQCDRMEECFKLIADMSSSGCLPDVSTYKELIEGLCL 3
T+GSTMSSPTAKTYAIMI+AL Q DR EECFKLI DM +SG LPDVSTYK++IEG+CL
Sbjct: 472 TKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCL 529
Score = 56.6 bits (135), Expect = 5e-06
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Frame = -1
Query: 500 KKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTR-VKPDANTYNILFFGWCRV 324
K I P+++ + +++ MC VEEA +++ + +PD TYN C
Sbjct: 506 KDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCEN 565
Query: 323 RNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMRTRGSTMSSPTA 144
+ + + MI+ G P T+ I F G A + M RG + T
Sbjct: 566 KKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDT- 624
Query: 143 KTYAIMIVALAQCDRMEECFKLIADMSSSG 54
Y +MI L C++ME+ L+ ++ + G
Sbjct: 625 --YCVMIEGLFNCNKMEDACFLLDEVVNKG 652
>emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
Length = 708
Score = 403 bits (1035), Expect = e-110
Identities = 190/238 (79%), Positives = 218/238 (91%)
Frame = -1
Query: 716 HQENYAHQPQTFNEMIDILSSTKYKVKQFRIVCDLLDYMKRNDKNTVPVDVLLVILRKYT 537
HQ+ Y+H+P+ +NEMIDILSSTKYKVKQFRIVCD+LDYMKRNDK +VPV+VLL+ILRKYT
Sbjct: 265 HQDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYT 324
Query: 536 EKHLAHLQKFTHKKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTRVKPDANT 357
EKHLAHL KF KKKIRVKTQPEINA NLLLD++CKC LVE+AQ MF++VK +VKPDANT
Sbjct: 325 EKHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANT 384
Query: 356 YNILFFGWCRVRNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMR 177
YNILFFGWCRVRNP+RGM+VLEEMI++GHTPD+FTY TAID+FC AGMV+EA LFEFMR
Sbjct: 385 YNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMR 444
Query: 176 TRGSTMSSPTAKTYAIMIVALAQCDRMEECFKLIADMSSSGCLPDVSTYKELIEGLCL 3
T+GSTMSSPTAKTYAIMI+AL Q DR EECFKLI DM +SG LPDVSTYK++IEG+CL
Sbjct: 445 TKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCL 502
Score = 56.6 bits (135), Expect = 5e-06
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Frame = -1
Query: 500 KKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTR-VKPDANTYNILFFGWCRV 324
K I P+++ + +++ MC VEEA +++ + +PD TYN C
Sbjct: 479 KDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCEN 538
Query: 323 RNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMRTRGSTMSSPTA 144
+ + + MI+ G P T+ I F G A + M RG + T
Sbjct: 539 KKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDT- 597
Query: 143 KTYAIMIVALAQCDRMEECFKLIADMSSSG 54
Y +MI L C++ME+ L+ ++ + G
Sbjct: 598 --YCVMIEGLFNCNKMEDACFLLDEVINKG 625
>ref|XP_002315827.1| predicted protein [Populus trichocarpa] gi|222864867|gb|EEF01998.1|
predicted protein [Populus trichocarpa]
Length = 472
Score = 394 bits (1011), Expect = e-107
Identities = 181/237 (76%), Positives = 215/237 (90%)
Frame = -1
Query: 716 HQENYAHQPQTFNEMIDILSSTKYKVKQFRIVCDLLDYMKRNDKNTVPVDVLLVILRKYT 537
HQ+NY+H+P +NEMIDIL+STKYK +QFRIVCD+LDYMKRN+KN VPV+VLL ILR YT
Sbjct: 55 HQKNYSHEPCAYNEMIDILTSTKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNYT 114
Query: 536 EKHLAHLQKFTHKKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTRVKPDANT 357
EK+L +QKF KK+IRVKTQPEINAFNLLLD++CKCCL E+A+G+F++VK +VKPDANT
Sbjct: 115 EKYLTRVQKFAKKKRIRVKTQPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANT 174
Query: 356 YNILFFGWCRVRNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMR 177
YN++FFGWCRVRNPTRGM+VLEEMI+LGHTPD+FTY TAID FC AGMV+EA LFEFMR
Sbjct: 175 YNVMFFGWCRVRNPTRGMKVLEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMR 234
Query: 176 TRGSTMSSPTAKTYAIMIVALAQCDRMEECFKLIADMSSSGCLPDVSTYKELIEGLC 6
T+GSTMSSPTAKTYAIMI AL + +RM+ECFKL+ DM +SGCLPDVST+KELIEG+C
Sbjct: 235 TKGSTMSSPTAKTYAIMIGALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMC 291
Score = 60.1 bits (144), Expect = 4e-07
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = -1
Query: 473 PEINAFNLLLDSMCKCCLVEEAQGMFQKVKTR-VKPDANTYNILFFGWCRVRNPTRGMQV 297
P+++ F L++ MC ++EA Q++ + PD TYN C +N +++
Sbjct: 278 PDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCFLKVLCENKNSEEALRL 337
Query: 296 LEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMRTRGSTMSSPTAKTYAIMIVA 117
E MI+ G P T+ I F G A + M RG TY +MI
Sbjct: 338 YERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFETWYEMDKRGCAQD---VDTYIVMIDG 394
Query: 116 LAQCDRMEECFKLIADMSSSG 54
L C+++E+ LI D+ + G
Sbjct: 395 LFGCNKVEDACFLIEDIVNKG 415
>ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Glycine max]
Length = 466
Score = 387 bits (993), Expect = e-105
Identities = 178/238 (74%), Positives = 217/238 (91%)
Frame = -1
Query: 716 HQENYAHQPQTFNEMIDILSSTKYKVKQFRIVCDLLDYMKRNDKNTVPVDVLLVILRKYT 537
HQE+Y+H+P +N+M+DILSST+YKVKQFRIVCD+L+YMKRN+K TVPV+VLLVILRKYT
Sbjct: 49 HQEDYSHEPCAYNDMMDILSSTRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKYT 108
Query: 536 EKHLAHLQKFTHKKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTRVKPDANT 357
EK+L H+QKF K++IRVKTQPEINAFNLLLD++CKCCLVE+A+ +++K++ VKP+A T
Sbjct: 109 EKYLTHVQKFARKRRIRVKTQPEINAFNLLLDALCKCCLVEDAETLYKKMRKTVKPNAET 168
Query: 356 YNILFFGWCRVRNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMR 177
YNI FGWCRVRNPTRGM++LEEM++LGH PDNF Y TAIDT+C AGMV+EAV LFEFMR
Sbjct: 169 YNIFVFGWCRVRNPTRGMKLLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMR 228
Query: 176 TRGSTMSSPTAKTYAIMIVALAQCDRMEECFKLIADMSSSGCLPDVSTYKELIEGLCL 3
T+GS++SSPTAKTYAI+IVALAQ DRMEECFKLI M SSGCLPDV+TYKE+IEG+C+
Sbjct: 229 TKGSSISSPTAKTYAIIIVALAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCV 286
Score = 73.6 bits (179), Expect = 4e-11
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 4/165 (2%)
Frame = -1
Query: 500 KKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTR----VKPDANTYNILFFGW 333
++ + + +P+ A+N +D+ CK +V EA +F+ ++T+ P A TY I+
Sbjct: 190 EEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVAL 249
Query: 332 CRVRNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMRTRGSTMSS 153
+ +++ MI G PD TY I+ C G + EA ++F+ G+
Sbjct: 250 AQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEA---YKFLEEMGNKSYR 306
Query: 152 PTAKTYAIMIVALAQCDRMEECFKLIADMSSSGCLPDVSTYKELI 18
P TY + L + E+ KL M C+P V TY LI
Sbjct: 307 PDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLI 351
Score = 55.8 bits (133), Expect = 8e-06
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Frame = -1
Query: 473 PEINAFNLLLDSMCKCCLVEEAQGMFQKVKTR-VKPDANTYNILFFGWCRVRNPTRGMQV 297
P++ + +++ MC C ++EA +++ + +PD TYN C + +++
Sbjct: 272 PDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKL 331
Query: 296 LEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMRTRGSTMSSPTAKTYAIMIVA 117
MI+L P TY I F A ++ M RG P TY++MI
Sbjct: 332 YGRMIELNCIPSVQTYNMLISMFFEIDDPDGAFETWQEMDNRGCR---PDIDTYSVMIDG 388
Query: 116 LAQCDRMEECFKLIADMSSSG 54
L C+++E+ L+ ++ + G
Sbjct: 389 LFNCNKVEDACFLLEEVINKG 409
>ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Glycine max]
Length = 466
Score = 382 bits (982), Expect = e-104
Identities = 176/238 (73%), Positives = 215/238 (90%)
Frame = -1
Query: 716 HQENYAHQPQTFNEMIDILSSTKYKVKQFRIVCDLLDYMKRNDKNTVPVDVLLVILRKYT 537
HQE+Y+H+P +N+M+DILSST+YKVKQFRIVCD+L+YMKRN++ VP +VLLVILRKYT
Sbjct: 49 HQEDYSHEPCAYNDMMDILSSTRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVILRKYT 108
Query: 536 EKHLAHLQKFTHKKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTRVKPDANT 357
EK+L H+QKF KK+IRVKTQ EINAFNLLLD++CKCCLVE+A+ +++K++ VKP+A T
Sbjct: 109 EKYLTHMQKFAKKKRIRVKTQLEINAFNLLLDALCKCCLVEDAESLYKKMRKTVKPNAET 168
Query: 356 YNILFFGWCRVRNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMR 177
YNIL FGWCRVRNPTRGM++LEEMI+LGH PDNFTY TAIDT+C GM++EAV LFEFMR
Sbjct: 169 YNILVFGWCRVRNPTRGMKLLEEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMR 228
Query: 176 TRGSTMSSPTAKTYAIMIVALAQCDRMEECFKLIADMSSSGCLPDVSTYKELIEGLCL 3
T+GST+SSPTAKTYAI+IVALAQ DRME+CFKLI M SSGCLPDV+TYKE+IEG+C+
Sbjct: 229 TKGSTISSPTAKTYAIIIVALAQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCM 286
Score = 61.6 bits (148), Expect = 2e-07
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 36/200 (18%)
Frame = -1
Query: 500 KKKIRVKTQPEINAFNLLLDSMCKCCLVEEAQGMFQKVKTR----VKPDANTYNILFFGW 333
++ I + +P+ +N +D+ CK ++ EA +F+ ++T+ P A TY I+
Sbjct: 190 EEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKTYAIIIVAL 249
Query: 332 CRVRNPTRGMQVLEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFE----------- 186
+ +++ MI G PD TY I+ C G + EA E
Sbjct: 250 AQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYRPDI 309
Query: 185 -----FMRTRGSTMSS----------------PTAKTYAIMIVALAQCDRMEECFKLIAD 69
F++ S P+ +TY ++I + D + F+ +
Sbjct: 310 VTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFETWQE 369
Query: 68 MSSSGCLPDVSTYKELIEGL 9
+ + GC PD TY +IEGL
Sbjct: 370 IDNRGCRPDTDTYCVMIEGL 389
Score = 56.6 bits (135), Expect = 5e-06
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = -1
Query: 473 PEINAFNLLLDSMCKCCLVEEAQGMFQKVKTR-VKPDANTYNILFFGWCRVRNPTRGMQV 297
P++ + +++ MC C ++EA +++ + +PD TYN C + +++
Sbjct: 272 PDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKL 331
Query: 296 LEEMIKLGHTPDNFTYTTAIDTFCNAGMVSEAVALFEFMRTRGSTMSSPTAKTYAIMIVA 117
MI+L P TY I F A ++ + RG P TY +MI
Sbjct: 332 YGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFETWQEIDNRGCR---PDTDTYCVMIEG 388
Query: 116 LAQCDRMEECFKLIADMSSSG 54
L C++ME+ L+ ++ + G
Sbjct: 389 LFNCNKMEDACFLLEEVINEG 409