BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016246
         (574 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282612.1| PREDICTED: 50S ribosomal protein L12, chloro...   163   2e-38
ref|XP_002511394.1| 50S ribosomal protein L7/L12, putative [Rici...   160   2e-37
ref|XP_002321601.1| predicted protein [Populus trichocarpa] gi|2...   155   3e-36
gb|ABA40429.1| unknown [Solanum tuberosum]                            155   6e-36
ref|XP_004170687.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosoma...   144   8e-33

>ref|XP_002282612.1| PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis
           vinifera]
          Length = 193

 Score =  163 bits (412), Expect = 2e-38
 Identities = 96/159 (60%), Positives = 109/159 (68%), Gaps = 4/159 (2%)
 Frame = +3

Query: 108 MKLLAFLRTVHLPPNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXXS 287
           MK  A ++TV + P LP   GPLQ R FQ DFVPR+   KPKR                S
Sbjct: 1   MKFTALVKTVRVHPTLPKIIGPLQSRFFQHDFVPREPNAKPKRYKYPPFYDPYGPKPPPS 60

Query: 288 DKVVQLAERIAALPLEERIQIFPALRHRLLQPEIQ-FSTEGMDLDSQGGSAMAE---EEK 455
           +KVV LAERIAAL  EER+QI P L+ RL  P+ Q  STEGM+L SQGG+A      EEK
Sbjct: 61  EKVVGLAERIAALAPEERLQIGPMLKDRLSLPKTQVISTEGMELGSQGGAAAGAGKVEEK 120

Query: 456 PEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDL 572
            EKTAFDVKLEK++AA+KIKVIKEVRAFTSLGLKEAKDL
Sbjct: 121 VEKTAFDVKLEKFEAAAKIKVIKEVRAFTSLGLKEAKDL 159


>ref|XP_002511394.1| 50S ribosomal protein L7/L12, putative [Ricinus communis]
           gi|223550509|gb|EEF51996.1| 50S ribosomal protein
           L7/L12, putative [Ricinus communis]
          Length = 193

 Score =  160 bits (404), Expect = 2e-37
 Identities = 93/159 (58%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
 Frame = +3

Query: 108 MKLLAFLRTVHLPPNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXXS 287
           MK +  LR+V     L   TGPLQ R FQ DFVPRD  + P++                S
Sbjct: 1   MKFVPLLRSVSTRYTLREITGPLQVRFFQHDFVPRDPKINPRKYKYPAFYDPYGPRPPPS 60

Query: 288 DKVVQLAERIAALPLEERIQIFPALRHRLLQPEIQ-FSTEGMDLDSQGGSAMAE---EEK 455
           DK+VQLAERIAALP EER QI P L ++L  P++Q  STEGMDL +QG  A      EEK
Sbjct: 61  DKIVQLAERIAALPPEERRQIGPTLHYKLNHPKLQTISTEGMDLGAQGSQAAVAAKVEEK 120

Query: 456 PEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDL 572
            EKTAFDVKLEK+DAA+KIKVIKEVRAFT+LGLKEAKDL
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDL 159


>ref|XP_002321601.1| predicted protein [Populus trichocarpa] gi|222868597|gb|EEF05728.1|
           predicted protein [Populus trichocarpa]
          Length = 195

 Score =  155 bits (393), Expect = 3e-36
 Identities = 94/161 (58%), Positives = 109/161 (67%), Gaps = 6/161 (3%)
 Frame = +3

Query: 108 MKLLAFLRTVHLP-PNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXX 284
           MK +A  R+V    P L   TGPLQ R FQ DFVPRD   KPK+                
Sbjct: 1   MKFIALARSVCAHHPALREITGPLQVRYFQHDFVPRDPKTKPKKYKYPLYYDPYGPRPPP 60

Query: 285 SDKVVQLAERIAALPLEERIQIFPALRHRLLQPEIQ-FSTEGMDLDSQGGSAMAE----E 449
           S+K++++AERIAALP EER QI  AL ++L  P++Q  STEGM L SQGG A A     E
Sbjct: 61  SEKIIEIAERIAALPPEERSQIGSALGYKLKHPKLQPISTEGMGLGSQGGEAAAGAAKVE 120

Query: 450 EKPEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDL 572
           EK EKTAFDVKLEK+DAA+KIKVIKEVRAFT+LGLKEAKDL
Sbjct: 121 EKKEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDL 161


>gb|ABA40429.1| unknown [Solanum tuberosum]
          Length = 194

 Score =  155 bits (391), Expect = 6e-36
 Identities = 95/160 (59%), Positives = 106/160 (66%), Gaps = 5/160 (3%)
 Frame = +3

Query: 108 MKLLAFLRTVHLPPNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXXS 287
           MKL+A LR +     L    GPLQ R FQPDFVPRD   KP R                S
Sbjct: 1   MKLIARLRPIQTCTALREIIGPLQSRSFQPDFVPRDPNAKPIRYKYPAAYDPYGPRPPPS 60

Query: 288 DKVVQLAERIAALPLEERIQIFPALRHRLLQPEI-QFSTEGMDLDSQGGS----AMAEEE 452
           DK+VQLAERIAAL  EER QI P LR  L  P + Q S EGMDL + GG+    A AEE+
Sbjct: 61  DKIVQLAERIAALAPEERRQIGPLLREILRHPNLKQISVEGMDLGAIGGAGGGPAKAEEK 120

Query: 453 KPEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDL 572
           K EKTAFDVKLEK+DAA+KIKVIKEVR+FTSLGLKEAK+L
Sbjct: 121 KVEKTAFDVKLEKFDAAAKIKVIKEVRSFTSLGLKEAKEL 160


>ref|XP_004170687.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L12,
           chloroplastic-like [Cucumis sativus]
          Length = 193

 Score =  144 bits (364), Expect = 8e-33
 Identities = 82/159 (51%), Positives = 100/159 (62%), Gaps = 4/159 (2%)
 Frame = +3

Query: 108 MKLLAFLRTVHLPPNLPGKTGPLQCRLFQPDFVPRDLMVKPKRXXXXXXXXXXXXXXXXS 287
           MKL    +++ +        G  Q R FQPDF PRD   KPK+                S
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 288 DKVVQLAERIAALPLEERIQIFPALRHRLLQPEIQ-FSTEGMDLDSQGGSAMAE---EEK 455
           DK+++LAERI ALP  ER QI P L  +L  P++Q  S +G+D+  +GG+A      EEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLXRKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 456 PEKTAFDVKLEKYDAASKIKVIKEVRAFTSLGLKEAKDL 572
            EKTAFDVKLEK+DAASKIKVIKEVRAFT+LGLKEAKDL
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDL 159