BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016190
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2...    72   6e-11
ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|2...    72   6e-11
ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putati...    70   1e-10
ref|XP_004162315.1| PREDICTED: 60S ribosomal export protein NMD3...    67   2e-09
ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3...    66   3e-09

>ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 33/43 (76%), Positives = 39/43 (90%)
 Frame = +2

Query: 68  NLDDIELDKYKNLVLPDAILIKKSYEEKRLKKRGKPRSW*LCS 196
           N +D+ELDKYKNLV+P+AIL+KKSYEEKR +KRGKPRSW L S
Sbjct: 383 NSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRSWKLKS 425


>ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|222848846|gb|EEE86393.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 33/43 (76%), Positives = 39/43 (90%)
 Frame = +2

Query: 68  NLDDIELDKYKNLVLPDAILIKKSYEEKRLKKRGKPRSW*LCS 196
           N +D+ELDKYKNLV+P+AIL+KKSYEEKR +KRGKPRSW L S
Sbjct: 383 NSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRSWKLKS 425


>ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
           gi|223526598|gb|EEF28848.1| nonsense-mediated mRNA decay
           protein, putative [Ricinus communis]
          Length = 511

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 34/43 (79%), Positives = 38/43 (88%)
 Frame = +2

Query: 68  NLDDIELDKYKNLVLPDAILIKKSYEEKRLKKRGKPRSW*LCS 196
           N +DIELDKYK LVLP+AILIKKSYEEKR +KRGKPR+W L S
Sbjct: 383 NSNDIELDKYKGLVLPEAILIKKSYEEKRQRKRGKPRAWKLKS 425


>ref|XP_004162315.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cucumis sativus]
          Length = 505

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = +2

Query: 68  NLDDIELDKYKNLVLPDAILIKKSYEEKRLKKRGKPRSW*LCS 196
           N +D+EL+KYK L LP+AILIKKSYEEKR +KRGKPRSW L S
Sbjct: 382 NSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPRSWKLKS 424


>ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
          Length = 510

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +2

Query: 68  NLDDIELDKYKNLVLPDAILIKKSYEEKRLKKRGKPRSW*LCS 196
           N +D+EL+KY+  VLP+AILIKKSYEEKR +KRGKPRSW L S
Sbjct: 382 NSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPRSWKLKS 424