BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016163
         (489 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524359.1| RNA binding protein, putative [Ricinus commu...    73   9e-24
emb|CBI40924.3| unnamed protein product [Vitis vinifera]               81   8e-22
ref|XP_003635077.1| PREDICTED: uncharacterized protein LOC100855...    81   8e-22
ref|XP_002326676.1| predicted protein [Populus trichocarpa] gi|2...    76   4e-20
ref|NP_193496.1| tRNA/rRNA methyltransferase (SpoU) family prote...    55   8e-13

>ref|XP_002524359.1| RNA binding protein, putative [Ricinus communis]
            gi|223536320|gb|EEF37970.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 1744

 Score = 72.8 bits (177), Expect(2) = 9e-24
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
 Frame = +2

Query: 236  ILSMKTVASVASWCTRFKRDDDSLDLIFTFLWSFSHKVILSKHFDL--DSETGAEICLAA 409
            + S+ +VASV SWC+ FK D     +   F WSF  K  L  +  L  D+E+GAE+CLAA
Sbjct: 848  VCSLPSVASVTSWCSLFKND-----VQLKFAWSFMWKFFLKTNSSLTYDTESGAEVCLAA 902

Query: 410  YEALVPVLKAVASSMTPKIFDLVMAS 487
            YEAL PVL+A+  + +P   DL+  S
Sbjct: 903  YEALAPVLRALVFTFSPLALDLIRDS 928



 Score = 62.4 bits (150), Expect(2) = 9e-24
 Identities = 34/78 (43%), Positives = 45/78 (57%)
 Frame = +3

Query: 3   GIEVRSNMKSHMLDRPARLGSLDASXXXXXXXXXXXXXXXXXVSYAKSICSAFWSCPNLD 182
           G ++RSN ++ +L    +LGS +AS                 VS+A + CS FW+    D
Sbjct: 758 GFKIRSNSENSLLRTIDQLGSEEASAINEKFSDLFLSILEELVSFASTSCSIFWTSFVKD 817

Query: 183 SSLPSSVRGKLGGPSQRR 236
           + LPSSVRGKLGGPSQRR
Sbjct: 818 TDLPSSVRGKLGGPSQRR 835


>emb|CBI40924.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score = 80.9 bits (198), Expect(2) = 8e-22
 Identities = 46/81 (56%), Positives = 54/81 (66%)
 Frame = +2

Query: 236 ILSMKTVASVASWCTRFKRDDDSLDLIFTFLWSFSHKVILSKHFDLDSETGAEICLAAYE 415
           I+SMKTVAS++SWC + K  D SL+L F FLW    K+I       DSE GAEI LAAYE
Sbjct: 303 IMSMKTVASISSWCVQLK-SDASLNLAFNFLWKSFWKIISCT--TCDSEIGAEIHLAAYE 359

Query: 416 ALVPVLKAVASSMTPKIFDLV 478
           AL PVLKAV S  +P   DL+
Sbjct: 360 ALAPVLKAVISVFSPLALDLI 380



 Score = 47.8 bits (112), Expect(2) = 8e-22
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   IEVRSNMKSHMLDRPARLGSLDASXXXXXXXXXXXXXXXXXVSYAKSICSAFWS-CPNLD 182
           ++VR+  +    +   +L S +AS                 V+YA   CS FWS     D
Sbjct: 213 VKVRTKSEFGFAESINQLSSSEASIATEKFVNVFVYILEELVTYANLSCSIFWSGVATED 272

Query: 183 SSLPSSVRGKLGGPSQRR 236
            +LP S++GKLGGPSQRR
Sbjct: 273 GNLPCSIKGKLGGPSQRR 290


>ref|XP_003635077.1| PREDICTED: uncharacterized protein LOC100855390 [Vitis vinifera]
          Length = 920

 Score = 80.9 bits (198), Expect(2) = 8e-22
 Identities = 46/81 (56%), Positives = 54/81 (66%)
 Frame = +2

Query: 236 ILSMKTVASVASWCTRFKRDDDSLDLIFTFLWSFSHKVILSKHFDLDSETGAEICLAAYE 415
           I+SMKTVAS++SWC + K  D SL+L F FLW    K+I       DSE GAEI LAAYE
Sbjct: 173 IMSMKTVASISSWCVQLK-SDASLNLAFNFLWKSFWKIISCT--TCDSEIGAEIHLAAYE 229

Query: 416 ALVPVLKAVASSMTPKIFDLV 478
           AL PVLKAV S  +P   DL+
Sbjct: 230 ALAPVLKAVISVFSPLALDLI 250



 Score = 47.8 bits (112), Expect(2) = 8e-22
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   IEVRSNMKSHMLDRPARLGSLDASXXXXXXXXXXXXXXXXXVSYAKSICSAFWS-CPNLD 182
           ++VR+  +    +   +L S +AS                 V+YA   CS FWS     D
Sbjct: 74  VKVRTKSEFGFAESINQLSSSEASIATEKFVNVFVYILEELVTYANLSCSIFWSGVATED 133

Query: 183 SSLPSSVRGKLGGPSQRR 236
            +LP S++GKLGGPSQRR
Sbjct: 134 GNLPCSIKGKLGGPSQRR 151


>ref|XP_002326676.1| predicted protein [Populus trichocarpa] gi|222833998|gb|EEE72475.1|
           predicted protein [Populus trichocarpa]
          Length = 1224

 Score = 75.9 bits (185), Expect(2) = 4e-20
 Identities = 40/81 (49%), Positives = 53/81 (65%)
 Frame = +2

Query: 236 ILSMKTVASVASWCTRFKRDDDSLDLIFTFLWSFSHKVILSKHFDLDSETGAEICLAAYE 415
           I S++ VAS++SWC +FK  D  L  ++ FLW F  K + S     DSE GAEICLAAYE
Sbjct: 331 ITSIQAVASISSWCAQFK-SDVKLSSVWNFLWKFFWKTVSSP--TCDSEAGAEICLAAYE 387

Query: 416 ALVPVLKAVASSMTPKIFDLV 478
           AL PVL+A+ S+ +    DL+
Sbjct: 388 ALAPVLRALVSTSSSLSLDLI 408



 Score = 47.0 bits (110), Expect(2) = 4e-20
 Identities = 28/78 (35%), Positives = 39/78 (50%)
 Frame = +3

Query: 3   GIEVRSNMKSHMLDRPARLGSLDASXXXXXXXXXXXXXXXXXVSYAKSICSAFWSCPNLD 182
           GI+++   +  +LD   +L   +AS                 VS+A    S FWS    +
Sbjct: 241 GIKIKCRSEISLLDTVDQLCYTEASMINGRIHGLFLFILEELVSFADLSSSIFWSSITKE 300

Query: 183 SSLPSSVRGKLGGPSQRR 236
           ++LP SVRGKLGG SQRR
Sbjct: 301 TTLPGSVRGKLGGRSQRR 318


>ref|NP_193496.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
            thaliana] gi|332658520|gb|AEE83920.1| tRNA/rRNA
            methyltransferase (SpoU) family protein [Arabidopsis
            thaliana]
          Length = 1850

 Score = 54.7 bits (130), Expect(2) = 8e-13
 Identities = 31/81 (38%), Positives = 45/81 (55%)
 Frame = +2

Query: 236  ILSMKTVASVASWCTRFKRDDDSLDLIFTFLWSFSHKVILSKHFDLDSETGAEICLAAYE 415
            +LS+KT+  ++S+C +F      L L   F W F+   I S+    +SE  AEI LAA+E
Sbjct: 947  VLSVKTIGLISSYCAQFTSGVGELKLALAFFWKFTQHTISSQ--ICNSEAAAEIYLAAFE 1004

Query: 416  ALVPVLKAVASSMTPKIFDLV 478
            AL  VL A  S  +   F+L+
Sbjct: 1005 ALASVLNAFVSLCSAGAFNLL 1025



 Score = 43.5 bits (101), Expect(2) = 8e-13
 Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = +3

Query: 129  VSYAKSICSAFWSCPNLDS-SLPSSVRGKLGGPSQRR 236
            + +A S CS FWS   +++ +LP SV GKLGGPSQRR
Sbjct: 898  IPFADSSCSIFWSHTTVENGALPGSVIGKLGGPSQRR 934