BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016150
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    77   2e-12
ref|XP_003636507.1| 70 kDa peptidyl-prolyl isomerase [Medicago t...    69   4e-10
ref|XP_003636506.1| 70 kDa peptidyl-prolyl isomerase [Medicago t...    69   4e-10
gb|ABD32287.2| Polynucleotidyl transferase, Ribonuclease H fold ...    68   9e-10
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    66   3e-09

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
 Frame = +2

Query: 65  KSIGVATSFWAECIAILEGVEMAISRGWLRLWVETDSEAASKAFTGGS-VPWQLEARWTS 241
           ++IG AT F AE  A +  +E +I      +W+ETDS+   KAF+    VPWQL  RW +
Sbjct: 45  QNIGHATCFKAELCAAIFAIEKSIEYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNN 104

Query: 242 CTAATQQLK--ITTIFREGNITADALAKVGTTLA 337
           C A  Q++K   T I REGN  AD+LAK G +LA
Sbjct: 105 CLALAQKIKCVCTHIHREGNAGADSLAKNGKSLA 138


>ref|XP_003636507.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula]
           gi|355502442|gb|AES83645.1| 70 kDa peptidyl-prolyl
           isomerase [Medicago truncatula]
          Length = 653

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
 Frame = +2

Query: 77  VATSFWAECIAILEGVEMAISRGWLRLWVETDSEAASKAFTGGS-VPWQLEARWTSCTAA 253
           ++++  AE  A +  +EMA S+GW   W+ET+S+    AF+  S VPW L  RW +  A 
Sbjct: 115 LSSALMAELSAAMFALEMANSKGWSCFWLETNSKLVELAFSNTSLVPWSLRNRWLNRFAL 174

Query: 254 TQQLK--ITTIFREGNITADALAKVGTTLA 337
           T  +   +T IFREGN  AD+LA +G +L+
Sbjct: 175 THSMNFLVTYIFREGNSCADSLANIGLSLS 204


>ref|XP_003636506.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula]
           gi|355502441|gb|AES83644.1| 70 kDa peptidyl-prolyl
           isomerase [Medicago truncatula]
          Length = 750

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
 Frame = +2

Query: 77  VATSFWAECIAILEGVEMAISRGWLRLWVETDSEAASKAFTGGS-VPWQLEARWTSCTAA 253
           ++++  AE  A +  +EMA S+GW   W+ET+S+    AF+  S VPW L  RW +  A 
Sbjct: 212 LSSALMAELSAAMFALEMANSKGWSCFWLETNSKLVELAFSNTSLVPWSLRNRWLNRFAL 271

Query: 254 TQQLK--ITTIFREGNITADALAKVGTTLA 337
           T  +   +T IFREGN  AD+LA +G +L+
Sbjct: 272 THSMNFLVTYIFREGNSCADSLANIGLSLS 301


>gb|ABD32287.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 111

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
 Frame = +2

Query: 113 LEGVEMAISRGWLRLWVETDSEAASKAFTGGS-VPWQLEARWTSCTAATQQLKI--TTIF 283
           +  +E+A S G+  +W+++DS+    AF   S VPW L  RW +C   T +++   T I+
Sbjct: 1   MNAIELASSMGFFNIWLQSDSQLVILAFKSISIVPWALRNRWENCLKLTHRMRFCATHIY 60

Query: 284 REGNITADALAKVGTTLAANDRTVFEGKPD 373
           REGN  AD+LA  G TL++ D   F+  PD
Sbjct: 61  REGNTCADSLANFGLTLSSLDLFWFDTVPD 90


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = +2

Query: 2    GPAGIGVSYRGRTGDFKMTMWKSIGVATSFWAECIAILEGVEMAISRGWLRLWVETDSEA 181
            G A  G  +R  +G F      +IG+A+ F AE +A +  +E A   GW  LW+E+DS +
Sbjct: 1034 GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTS 1093

Query: 182  ASKAFTGGS-VPWQLEARWTSCTAATQQLKITTIFREGNITADALAKVG 325
            A   F+  S V W L  RW +      Q+  + I  EGN  AD LA +G
Sbjct: 1094 ALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHILHEGNRCADNLANMG 1142