BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016114
         (1840 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36057.3| unnamed protein product [Vitis vinifera]              462   e-127
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19...   439   e-120
ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair ...   407   e-111
ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788...   404   e-110
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik...   397   e-108

>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score =  462 bits (1189), Expect = e-127
 Identities = 239/433 (55%), Positives = 317/433 (73%), Gaps = 5/433 (1%)
 Frame = -1

Query: 1840 QGLIVEKAYNILLSSTQFPRKDSLLFSDSMKLEELQVDQSLNTLSCKDKWIIYLFASVII 1661
            QG I++KAY++L S   F   +S+  + +++LE LQ  Q L   SC+DKW+I LFAS II
Sbjct: 728  QGKIIKKAYSVLSSCPSFTLMESMPITGTVQLEGLQHTQDLECFSCRDKWVISLFASAII 787

Query: 1660 ALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNVDTSCACNLEEAMD 1481
            A+R + H+PN+R++L LFM  LL GH P AQALGSM+NKL    + V+ S  C LE+A+D
Sbjct: 788  AVRPQTHIPNIRVVLHLFMTNLLKGHVPAAQALGSMVNKLCPKSNGVEISSTCTLEDALD 847

Query: 1480 VVLKMGLSST---SPLRRHRVVDGDHEA--VDKPQSVGVCEFVQSKAMVGLAWIGKGLVM 1316
            ++    L  +    PL+R   +  D+E    +   S   C+ +Q  A+ GLAWIGKGL++
Sbjct: 848  IIFNTSLWDSHNHGPLKRCSGIGVDNEMGLANLCLSASNCQLLQVCAIEGLAWIGKGLLL 907

Query: 1315 RGSEKMKDVVMIFLRCXXXXXXXXXXXSQQDTLQECKEQEIHPLVMRSAADAFNVLLSDS 1136
            RG EK+KD+ MIFLRC                 +  +EQ++ P V +SAADAF+VL+SDS
Sbjct: 908  RGHEKVKDITMIFLRCLLS--------------KNNQEQDVLPSVAKSAADAFHVLMSDS 953

Query: 1135 DVCLNKRFHATTKPLYKQRFFSSMMPILLTSIKESDSSMTRSMLYRAFGNVVSNTPLPAV 956
            ++CLNKRFHA  +PLYKQRFFSS++PIL++S+ ES  S TRSMLYRA  +++S+TPL AV
Sbjct: 954  EICLNKRFHANIRPLYKQRFFSSVLPILVSSMAESRLSNTRSMLYRALAHIISDTPLIAV 1013

Query: 955  VTEAKTLIFVLLDGLSILSMDVRDRDLTYSLLLVLSGMIMDENGREAVTENAHIIINRLI 776
            ++EAK +I +LLD LSILS    D+D+ Y+LLLVLSG++MD+NG+E V ENAH+IIN LI
Sbjct: 1014 LSEAKKIIPILLDSLSILSTYNLDKDILYNLLLVLSGILMDKNGQETVVENAHVIINCLI 1073

Query: 775  GLVYYPHMMLVRETAIQCLVAMSGLPHTRIFPMRTKVLQAISKSLDDPKRTVRHEAVRCL 596
            GLV YPHMM+VRETAIQCLVAMS LPH RI+PMRT+VL+++ K+LDDPKR VRHEAVRC 
Sbjct: 1074 GLVGYPHMMVVRETAIQCLVAMSRLPHARIYPMRTQVLRSVQKALDDPKRAVRHEAVRCR 1133

Query: 595  QAWASISSRSVNF 557
            QAWASI+SRS++F
Sbjct: 1134 QAWASIASRSLHF 1146


>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
            communis] gi|223544868|gb|EEF46383.1| DNA
            repair/transcription protein met18/mms19, putative
            [Ricinus communis]
          Length = 1174

 Score =  439 bits (1128), Expect = e-120
 Identities = 231/437 (52%), Positives = 310/437 (70%), Gaps = 9/437 (2%)
 Frame = -1

Query: 1840 QGLIVEKAYNILLSSTQFPRKDSLLFSDSMKLEELQVDQSLNTLSCKDKWIIYLFASVII 1661
            Q +I+ KAY +L SST  P K+SL   +S++LE  +  Q ++ LS +D+WI  LFASVII
Sbjct: 743  QNVIIYKAYGVLSSSTFLPLKESLS-ENSVQLECFRAIQQMDRLSSRDEWIHSLFASVII 801

Query: 1660 ALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNVDTSCACNLEEAMD 1481
            ALR + H+PN RI+L LF+  LL GH   A+ALGS++NKL    ++   S  C +EEAMD
Sbjct: 802  ALRPQTHIPNTRIVLHLFITALLKGHVTTAEALGSLVNKLDQKSNDACISGDCTIEEAMD 861

Query: 1480 VVLKMGL----SSTSPLRRHRVVDGDHE-----AVDKPQSVGVCEFVQSKAMVGLAWIGK 1328
            ++  + L     + S  R  R  +GD        +D P       +++  A+VGLAWIGK
Sbjct: 862  IIFSINLLCSFGNGSSGRFDRTRNGDEMDLIKLCLDAPNLA----WIKIPAIVGLAWIGK 917

Query: 1327 GLVMRGSEKMKDVVMIFLRCXXXXXXXXXXXSQQDTLQECKEQEIHPLVMRSAADAFNVL 1148
            GL+MRG EK+KD+ M+FL C            +  +L+   EQ++   VM+SA+DAF +L
Sbjct: 918  GLLMRGHEKVKDITMVFLNCLLSDGEIGASPLKHGSLENNGEQDMQQSVMKSASDAFQIL 977

Query: 1147 LSDSDVCLNKRFHATTKPLYKQRFFSSMMPILLTSIKESDSSMTRSMLYRAFGNVVSNTP 968
            +SDS++CLN+++HA  +PLYKQRFFSS+MPIL   I +SDSS ++S+LYRAF +V+S+TP
Sbjct: 978  MSDSELCLNRKYHAIVRPLYKQRFFSSIMPILYPLITKSDSSFSKSLLYRAFAHVISDTP 1037

Query: 967  LPAVVTEAKTLIFVLLDGLSILSMDVRDRDLTYSLLLVLSGMIMDENGREAVTENAHIII 788
            L  +  +AK L+ VLLDGL++L  DV D+D+ Y LLLVLSG++ D NG+EAV ENAHIII
Sbjct: 1038 LSVISNDAKKLVPVLLDGLTLLGKDVLDKDIMYGLLLVLSGILTDTNGKEAVIENAHIII 1097

Query: 787  NRLIGLVYYPHMMLVRETAIQCLVAMSGLPHTRIFPMRTKVLQAISKSLDDPKRTVRHEA 608
              LI LV YPHMML+RETA+QCLVAMS LPHTRI+P+R +VLQAISK+LDDPKR VR EA
Sbjct: 1098 KCLIELVAYPHMMLIRETAVQCLVAMSELPHTRIYPVRIQVLQAISKALDDPKRAVRQEA 1157

Query: 607  VRCLQAWASISSRSVNF 557
            VRC QAWASI+SRS+++
Sbjct: 1158 VRCRQAWASIASRSLHY 1174


>ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Cucumis
            sativus]
          Length = 1147

 Score =  407 bits (1045), Expect = e-111
 Identities = 215/429 (50%), Positives = 303/429 (70%), Gaps = 1/429 (0%)
 Frame = -1

Query: 1840 QGLIVEKAYNILLSSTQFPRKDSLLFSDSMKLEELQVDQSLNTLSCKDKWIIYLFASVII 1661
            Q +IV+KA+N+LL+S+  P K +L  +  +++E LQ  Q  +  + +D+WI+ LFASV I
Sbjct: 722  QNIIVQKAFNVLLTSSFSPLKVTLSNTIPVQMEGLQFLQQKDNPTSRDEWILSLFASVTI 781

Query: 1660 ALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNVDTSCACNLEEAMD 1481
            ALR ++HVP+VR+I++L M     G  P AQALGSMINKL      V+ S   +LEEA+D
Sbjct: 782  ALRPQVHVPDVRLIIRLLMLSTTRGCVPAAQALGSMINKLSVKSDKVEVSSYVSLEEAID 841

Query: 1480 VVLKMGLSSTSPLRRHRVVDGDHEAV-DKPQSVGVCEFVQSKAMVGLAWIGKGLVMRGSE 1304
            ++ K        L      DG    + D   S+     +Q  A+VGL+WIGKGL++ G +
Sbjct: 842  IIFKTEFRC---LHNESTGDGSEMFLTDLCSSIEKSSLLQVHAVVGLSWIGKGLLLCGHD 898

Query: 1303 KMKDVVMIFLRCXXXXXXXXXXXSQQDTLQECKEQEIHPLVMRSAADAFNVLLSDSDVCL 1124
            K++D+ M+FL+             QQ  L++  E  +   VM+ AA+AF++L+SDS+ CL
Sbjct: 899  KVRDITMVFLQLLVSKSRTDASPLQQFKLEKDNETSLDFAVMKGAAEAFHILMSDSEACL 958

Query: 1123 NKRFHATTKPLYKQRFFSSMMPILLTSIKESDSSMTRSMLYRAFGNVVSNTPLPAVVTEA 944
            N++FHA  +PLYKQRFFS+MMPI  T + +SD+S++R MLY+A+ +V+S+TPL A++++A
Sbjct: 959  NRKFHAIVRPLYKQRFFSTMMPIFQTLVSKSDTSLSRYMLYQAYAHVISDTPLTAILSDA 1018

Query: 943  KTLIFVLLDGLSILSMDVRDRDLTYSLLLVLSGMIMDENGREAVTENAHIIINRLIGLVY 764
            K  I +LLDGL  LS++  ++D+ YSLLLVLSG++MD+NG+EAVTENAH I++ L GL  
Sbjct: 1019 KKFIPMLLDGLLTLSVNGINKDVVYSLLLVLSGILMDKNGQEAVTENAHKIVDCLAGLTD 1078

Query: 763  YPHMMLVRETAIQCLVAMSGLPHTRIFPMRTKVLQAISKSLDDPKRTVRHEAVRCLQAWA 584
            + HMMLVRETAIQCLVA+S LPH RI+PMR +VL  ISK+LDDPKR+VR EAVRC QAWA
Sbjct: 1079 FSHMMLVRETAIQCLVAVSELPHARIYPMRRQVLHVISKALDDPKRSVRQEAVRCRQAWA 1138

Query: 583  SISSRSVNF 557
            SI+SRS++F
Sbjct: 1139 SIASRSLHF 1147


>ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788537 [Glycine max]
          Length = 1135

 Score =  404 bits (1039), Expect = e-110
 Identities = 221/425 (52%), Positives = 300/425 (70%), Gaps = 4/425 (0%)
 Frame = -1

Query: 1840 QGLIVEKAYNILLSSTQFPRKDSLLFSDSMKLEELQVDQSLNTLSCKDKWIIYLFASVII 1661
            Q LI+ KAY++L S T F  K+         +E L +      +S +D+ II LFASV+I
Sbjct: 722  QNLIIRKAYSVLSSHTNFQLKE---------VERLPLTPGKYDISLRDEGIISLFASVVI 772

Query: 1660 ALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNVDTSCACNLEEAMD 1481
            A+  + ++PN+R+++ LF+  LL G  PVAQALGS++NKL ST S  + S    LEEA+D
Sbjct: 773  AVCPKTYIPNIRVLVHLFIITLLRGVVPVAQALGSILNKLVSTSSTAENSSDLTLEEALD 832

Query: 1480 VVL--KMGLSSTSPLRRHRVVDGDHEAVDKPQSVGVCE--FVQSKAMVGLAWIGKGLVMR 1313
             +   K+  SST  L+R       +E V     +G+     +Q  A+ GL+W+GKGL++R
Sbjct: 833  AIFNTKISFSSTDMLQRCNGTSNGNEMVFTDICLGIANDRMLQINAICGLSWMGKGLLLR 892

Query: 1312 GSEKMKDVVMIFLRCXXXXXXXXXXXSQQDTLQECKEQEIHPLVMRSAADAFNVLLSDSD 1133
            G EK+KD+ MIF+ C            + D+L+  +EQ    LV++ A DAF+VL+SDS+
Sbjct: 893  GHEKIKDITMIFMECLISGTKSASPLIK-DSLENTEEQIQDLLVIKCATDAFHVLMSDSE 951

Query: 1132 VCLNKRFHATTKPLYKQRFFSSMMPILLTSIKESDSSMTRSMLYRAFGNVVSNTPLPAVV 953
            VCLN++FHAT +PLYKQRFFSS+MPIL   I +S SS++RS LYRAF +++S+TP+ A+V
Sbjct: 952  VCLNRKFHATIRPLYKQRFFSSVMPILQQIITKSHSSLSRSFLYRAFAHIMSDTPMVAIV 1011

Query: 952  TEAKTLIFVLLDGLSILSMDVRDRDLTYSLLLVLSGMIMDENGREAVTENAHIIINRLIG 773
            +EAK LI VLLD LS+L+ +++D+D+ Y LLLVLSG++M++NG+EAV ENAHIIIN LI 
Sbjct: 1012 SEAKKLIPVLLDCLSMLT-EIQDKDMLYGLLLVLSGILMEKNGQEAVVENAHIIINCLIK 1070

Query: 772  LVYYPHMMLVRETAIQCLVAMSGLPHTRIFPMRTKVLQAISKSLDDPKRTVRHEAVRCLQ 593
            LV YPH MLVRETAIQCLVA+S LPH RI+PMRT+VL+AISK LDD KR VRHEAV+C Q
Sbjct: 1071 LVGYPHKMLVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQ 1130

Query: 592  AWASI 578
             WAS+
Sbjct: 1131 TWASM 1135


>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
            truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
            excision repair protein-like protein [Medicago
            truncatula]
          Length = 1140

 Score =  397 bits (1021), Expect = e-108
 Identities = 219/433 (50%), Positives = 296/433 (68%), Gaps = 5/433 (1%)
 Frame = -1

Query: 1840 QGLIVEKAYNILLSSTQFPRKDSLLFSDSMKLEELQVDQSLNTLSCKDKWIIYLFASVII 1661
            Q + ++KAY+ L S T+F   D         +  L +      +S +D+ I+ LFASVII
Sbjct: 717  QNVTIQKAYSTLSSHTKFQLND---------VGRLPLTSGKYDISPRDEGILLLFASVII 767

Query: 1660 ALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNVDTSCACNLEEAMD 1481
            ALR + H+PN+R +L LF+  LL G  PVAQALGSM+NKL S  +  + S    LEEA+D
Sbjct: 768  ALRPKTHIPNIRGLLHLFIITLLKGVVPVAQALGSMLNKLTSKSNGAEKSDELTLEEALD 827

Query: 1480 VVL--KMGLSSTSPLRRHRVVDGDHEAVDKPQSVGVCE--FVQSKAMVGLAWIGKGLVMR 1313
            ++   K+  SS + L+ +       + V     +G+     +QS A+ GL+WIGKGL++R
Sbjct: 828  IIFNTKIWFSSNNMLQIYNGSSNGSDIVLTDLCLGITNDRLLQSNAICGLSWIGKGLLLR 887

Query: 1312 GSEKMKDVVMIFLRCXXXXXXXXXXXSQQDTLQECKEQEIHPLVMRSAADAFNVLLSDSD 1133
            G EK+KD+ MIF  C             + +L+  ++Q+  PL  + A +AF+VL+SD++
Sbjct: 888  GHEKIKDITMIFTECLISDRRKTSVPLVEGSLENTEKQKCDPLARKCATEAFHVLMSDAE 947

Query: 1132 VCLNKRFHATTKPLYKQRFFSSMMPILLTSIKESDSSMTRSMLYRAFGNVVSNTPLPAVV 953
             CLN++FHAT +PLYKQRFFSSMMPI L  I  SDS ++RS+L RAF +V+S+TPL  ++
Sbjct: 948  DCLNRKFHATVRPLYKQRFFSSMMPIFLQLISRSDSLLSRSLLLRAFAHVMSDTPLIVIL 1007

Query: 952  TEAKTLIFVLLDGLSILSMDVRDRDLTYSLLLVLSGMIMDENGREAVTENAHIIINRLIG 773
             EAK LI VLLD L +L+ D++D+D+ Y LLLVLSGM+ ++NG+EAV ENAHIIIN LI 
Sbjct: 1008 NEAKKLIPVLLDCLFMLTEDIQDKDILYGLLLVLSGMLTEKNGQEAVIENAHIIINGLIK 1067

Query: 772  LVYYPHMMLVRETAIQCLVAMSGLPHTRIFPMRTKVLQAISKSLDDPKRTVRHEAVRCLQ 593
            LV YPH  LVRETAIQCLVA+S LPH RI+P+RT+VLQAI K LDD KR+VR+EAV+C Q
Sbjct: 1068 LVDYPHKTLVRETAIQCLVALSELPHVRIYPLRTQVLQAIFKCLDDTKRSVRNEAVKCRQ 1127

Query: 592  AWASI-SSRSVNF 557
            AWASI SSRS+ F
Sbjct: 1128 AWASIASSRSLRF 1140