BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015992
         (838 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530940.1| pumilio, putative [Ricinus communis] gi|2235...   131   2e-28
ref|XP_002311080.1| predicted protein [Populus trichocarpa] gi|2...   129   8e-28
ref|XP_002316382.1| predicted protein [Populus trichocarpa] gi|2...   126   7e-27
ref|XP_003591862.1| 60S ribosomal protein L4 [Medicago truncatul...   119   8e-25
ref|XP_002273503.1| PREDICTED: pumilio homolog 4 [Vitis vinifera...   119   8e-25

>ref|XP_002530940.1| pumilio, putative [Ricinus communis] gi|223529499|gb|EEF31455.1|
           pumilio, putative [Ricinus communis]
          Length = 1024

 Score =  131 bits (329), Expect = 2e-28
 Identities = 86/198 (43%), Positives = 109/198 (55%), Gaps = 1/198 (0%)
 Frame = +3

Query: 246 TDLEVRASLGEVIRRGSNGNLDEILGKDYXXXXXXXXXXXXVINRERDLNIYRSGSAPPT 425
           +++++  SL + ++R  NGNL++    +              I+RERDLNIYRSGSAPPT
Sbjct: 5   SNIDMLLSLDDHLQR-PNGNLEDSFQSELEMILQAQRNQHY-IDRERDLNIYRSGSAPPT 62

Query: 426 VEGSLNAVGSLFRNSNNTNFLGIXXXXXXXXXXXLSEEEIRSHPAXXXXXXXXXXXXXXX 605
           VEGSL+AVGSLFRN N ++   I           LS++EIRSHPA               
Sbjct: 63  VEGSLSAVGSLFRNPNFSDVSSI--SNSSRSNTVLSDDEIRSHPAYLSYYYSHDNINPRL 120

Query: 606 XXXXXSKEDWRVAQRFQTGTSSYGGIGD-RRKEFLDDGSSRSLFSLQPGHLGQNGDGDFV 782
                SKEDWRVAQRFQ      G IGD R+K+F+D+G   SLFSLQP    Q  D D +
Sbjct: 121 PPPLLSKEDWRVAQRFQASGPLLGDIGDLRKKKFVDEGDGSSLFSLQPRLSAQKLDNDLM 180

Query: 783 EPRKVTPRNLTRQPSAEW 836
             R V   N + Q  AEW
Sbjct: 181 GIRNVR-NNFSMQNPAEW 197


>ref|XP_002311080.1| predicted protein [Populus trichocarpa] gi|222850900|gb|EEE88447.1|
           predicted protein [Populus trichocarpa]
          Length = 999

 Score =  129 bits (324), Expect = 8e-28
 Identities = 76/191 (39%), Positives = 105/191 (54%), Gaps = 1/191 (0%)
 Frame = +3

Query: 267 SLGEVIRRGSNGNLDEILGKDYXXXXXXXXXXXXVINRERDLNIYRSGSAPPTVEGSLNA 446
           ++ + ++ G  GNL++ L  +             +   ERDL+ YRSGSAPPTVEGSL+A
Sbjct: 4   TVDDYLQGGFGGNLEDNLQSELELILQARRRNQRI---ERDLDRYRSGSAPPTVEGSLSA 60

Query: 447 VGSLFRNSNNTNFLGIXXXXXXXXXXXLSEEEIRSHPAXXXXXXXXXXXXXXXXXXXXSK 626
           VGSLFRN+N ++   +           L+EEEIRSHP+                    SK
Sbjct: 61  VGSLFRNNNLSDINSVTSSNGNCNNVVLTEEEIRSHPSYLSYYYSHDSINPRLPPPLLSK 120

Query: 627 EDWRVAQRFQTGTSSYGGIGDRRK-EFLDDGSSRSLFSLQPGHLGQNGDGDFVEPRKVTP 803
           EDWRVAQRFQ+  S +GGIG+ RK + ++D  S SLFS+QPG      D D +E    + 
Sbjct: 121 EDWRVAQRFQSSGSMFGGIGNLRKNKVVEDSDSSSLFSIQPGLSVHKVDIDLIESSNSSR 180

Query: 804 RNLTRQPSAEW 836
            N+ R  S++W
Sbjct: 181 NNVIRNASSKW 191


>ref|XP_002316382.1| predicted protein [Populus trichocarpa] gi|222865422|gb|EEF02553.1|
           predicted protein [Populus trichocarpa]
          Length = 998

 Score =  126 bits (316), Expect = 7e-27
 Identities = 76/153 (49%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
 Frame = +3

Query: 381 ERDLNIYRSGSAPPTVEGSLNAVGSLFRNSNNTNFLGIXXXXXXXXXXXLSEEEIRSHPA 560
           ERDL+IYRSGSAPPTVEGSL+AVGSLFRN N ++   +           L+E+EIRSHP+
Sbjct: 35  ERDLDIYRSGSAPPTVEGSLSAVGSLFRNYNLSDVNSV------SNNVVLAEDEIRSHPS 88

Query: 561 XXXXXXXXXXXXXXXXXXXXSKEDWRVAQRFQTGTSSYGGIGDRRKEFLDDGSSR-SLFS 737
                               SKEDW VAQRFQ+  SS+GGIGD R   + D S R SLFS
Sbjct: 89  YLLYYYSHDNINPRLPPPLLSKEDWLVAQRFQSSGSSFGGIGDLRNNKVVDNSDRSSLFS 148

Query: 738 LQPGHLGQNGDGDFVEPRKVTPRNLTRQPSAEW 836
           +QPG      D D  E R      LTR  SAEW
Sbjct: 149 MQPGLSVHKVDNDLTELRNSNTTCLTRNASAEW 181


>ref|XP_003591862.1| 60S ribosomal protein L4 [Medicago truncatula]
           gi|355480910|gb|AES62113.1| 60S ribosomal protein L4
           [Medicago truncatula]
          Length = 1176

 Score =  119 bits (298), Expect = 8e-25
 Identities = 73/156 (46%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
 Frame = +3

Query: 372 INRERDLNIYRSGSAPPTVEGSLNAVGSLFRNSNNTNFLGIXXXXXXXXXXXLSEEEIRS 551
           INRER  +IYRSGSAPPTVEGSL+A GSL     N ++              L+E+EIRS
Sbjct: 40  INRERGYDIYRSGSAPPTVEGSLSAFGSL----RNFDYRANNSGRSNNNDGVLTEDEIRS 95

Query: 552 HPAXXXXXXXXXXXXXXXXXXXXSKEDWRVAQRFQTG--TSSYGGIGDRRKEFLDDGSSR 725
           HPA                    SKEDWRVAQRFQ G  +SS    GD RK    +G S 
Sbjct: 96  HPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIERFGDWRKNATSNGDSS 155

Query: 726 SLFSLQPGHLGQNGDGDFVEPRKVTPRNLTRQPSAE 833
           SLFS+QPG   Q  + D +E RK + RNL RQ S +
Sbjct: 156 SLFSMQPGFSVQQAENDLMELRKASGRNLPRQSSTQ 191


>ref|XP_002273503.1| PREDICTED: pumilio homolog 4 [Vitis vinifera]
           gi|296085990|emb|CBI31431.3| unnamed protein product
           [Vitis vinifera]
          Length = 1026

 Score =  119 bits (298), Expect = 8e-25
 Identities = 78/199 (39%), Positives = 102/199 (51%), Gaps = 2/199 (1%)
 Frame = +3

Query: 246 TDLEVRASLGEVIRRGSNGNLDEILGKDYXXXXXXXXXXXXVINRERDLNIYRSGSAPPT 425
           TD+    + G+ +    +GN+ +    D             +++R RDLNI+RSGSAPPT
Sbjct: 7   TDMRTSLNEGQSL---VDGNIGDYSLHDELQAMLREQRNRGLVDRGRDLNIFRSGSAPPT 63

Query: 426 VEGSLNAVGSLFRNS--NNTNFLGIXXXXXXXXXXXLSEEEIRSHPAXXXXXXXXXXXXX 599
           VEGSL+AVG LFRN+  N  N               L+E+EI SHPA             
Sbjct: 64  VEGSLSAVGGLFRNADVNEINHRS----SNKTTNGVLTEDEILSHPAYLSYYYSHENINP 119

Query: 600 XXXXXXXSKEDWRVAQRFQTGTSSYGGIGDRRKEFLDDGSSRSLFSLQPGHLGQNGDGDF 779
                  SKEDWRVAQRFQ G+S  G  G  RK  L D +S SLFS QPG      + + 
Sbjct: 120 RLPPPMLSKEDWRVAQRFQAGSSFGGSGGWERKRALVDDNSSSLFSRQPGLSVHKVESEL 179

Query: 780 VEPRKVTPRNLTRQPSAEW 836
           +E RK   R++ RQ S++W
Sbjct: 180 MELRKAAGRHIPRQTSSDW 198