BLASTX nr result
ID: Coptis24_contig00015944
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00015944
(401 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI38165.3| unnamed protein product [Vitis vinifera] 220 8e-56
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi... 220 8e-56
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi... 204 6e-51
ref|XP_002517667.1| pentatricopeptide repeat-containing protein,... 204 6e-51
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ... 195 3e-48
>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 220 bits (561), Expect = 8e-56
Identities = 101/132 (76%), Positives = 117/132 (88%)
Frame = +3
Query: 6 VHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSGF 185
VHARI+ TQF+ EIFIQNRLIDVY KC CL D+RKLFD+MP ++TFTW+S+I+ LTKSGF
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96
Query: 186 LDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSALSA 365
LDEA +LF SMPEPDQCSWNSMVSGFAQHD FEE+LE+FV+MHREDFLLNEYS+ SALSA
Sbjct: 97 LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156
Query: 366 CAGLVDMKTSVQ 401
CAGL+D+ Q
Sbjct: 157 CAGLMDLNMGTQ 168
Score = 80.9 bits (198), Expect = 1e-13
Identities = 35/122 (28%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +3
Query: 3 KVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKS 179
++HAR++KT +F ++ + N L+D+YAKC + ++R++FD+M ++ + S+++ ++
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328
Query: 180 GFLDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSAL 359
+ A +F+ M + + SWN++++G+ Q+ EEAL F + RE Y++ + L
Sbjct: 329 ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL 388
Query: 360 SA 365
+
Sbjct: 389 KS 390
Score = 66.2 bits (160), Expect = 3e-09
Identities = 35/123 (28%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSG 182
+VHA + K+++++++++ + LID+Y+KCG + + ++F M ++ TW+S+IT ++G
Sbjct: 168 QVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNG 227
Query: 183 FLDEAFKLF----NSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYS 350
EA ++F +S EPD+ + S+VS A +E L+ R+ + + ++
Sbjct: 228 PASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLG 287
Query: 351 SAL 359
+AL
Sbjct: 288 NAL 290
Score = 63.5 bits (153), Expect = 2e-08
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Frame = +3
Query: 39 SEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSGFLDEAFKLFNSM 218
S+IF+ N LID+Y KCG ++D ++F+KM +D +W++II ++G+ EA ++F M
Sbjct: 390 SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 449
Query: 219 ----PEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFL 329
+PD + ++ + EE +F M +
Sbjct: 450 LVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLI 490
>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 220 bits (561), Expect = 8e-56
Identities = 101/132 (76%), Positives = 117/132 (88%)
Frame = +3
Query: 6 VHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSGF 185
VHARI+ TQF+ EIFIQNRLIDVY KC CL D+RKLFD+MP ++TFTW+S+I+ LTKSGF
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96
Query: 186 LDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSALSA 365
LDEA +LF SMPEPDQCSWNSMVSGFAQHD FEE+LE+FV+MHREDFLLNEYS+ SALSA
Sbjct: 97 LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156
Query: 366 CAGLVDMKTSVQ 401
CAGL+D+ Q
Sbjct: 157 CAGLMDLNMGTQ 168
Score = 93.2 bits (230), Expect = 2e-17
Identities = 41/129 (31%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Frame = +3
Query: 3 KVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKS 179
++HAR++KT +F ++ + N L+D+YAKC + ++R++FD+M ++ + S+++ ++
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328
Query: 180 GFLDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSAL 359
+ A +F+ M + + SWN++++G+ Q+ EEAL F + RE Y++ + L
Sbjct: 329 ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL 388
Query: 360 SACAGLVDM 386
SACA L D+
Sbjct: 389 SACANLADL 397
Score = 66.2 bits (160), Expect = 3e-09
Identities = 35/123 (28%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSG 182
+VHA + K+++++++++ + LID+Y+KCG + + ++F M ++ TW+S+IT ++G
Sbjct: 168 QVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNG 227
Query: 183 FLDEAFKLF----NSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYS 350
EA ++F +S EPD+ + S+VS A +E L+ R+ + + ++
Sbjct: 228 PASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLG 287
Query: 351 SAL 359
+AL
Sbjct: 288 NAL 290
Score = 65.1 bits (157), Expect = 6e-09
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Frame = +3
Query: 3 KVHARIIKTQFA------SEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIIT 164
+ H ++K F S+IF+ N LID+Y KCG ++D ++F+KM +D +W++II
Sbjct: 402 QAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIV 461
Query: 165 ALTKSGFLDEAFKLFNSM----PEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFL 329
++G+ EA ++F M +PD + ++ + EE +F M +
Sbjct: 462 GYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLI 520
>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 204 bits (519), Expect = 6e-51
Identities = 91/133 (68%), Positives = 114/133 (85%)
Frame = +3
Query: 3 KVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSG 182
++HARIIKTQF+SEIFIQNRL+D Y KCG +D+RK+FD+MP ++TF+++++++ LTK G
Sbjct: 40 RIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFG 99
Query: 183 FLDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSALS 362
LDEAF +F SMPEPDQCSWN+MVSGFAQHD FEEAL FFV MH EDF+LNEYS+ SALS
Sbjct: 100 KLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALS 159
Query: 363 ACAGLVDMKTSVQ 401
ACAGL D+ +Q
Sbjct: 160 ACAGLTDLNMGIQ 172
Score = 93.6 bits (231), Expect = 2e-17
Identities = 41/134 (30%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Frame = +3
Query: 3 KVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKS 179
++HAR++K ++ +++ + N L+D+YAKC + ++R +FD+MP ++ + S++ ++
Sbjct: 273 QIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARA 332
Query: 180 GFLDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSAL 359
+ A +F++M E + SWN++++G+ Q+ EEA+ F+ + RE Y++ + L
Sbjct: 333 ASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLL 392
Query: 360 SACAGLVDMKTSVQ 401
+ACA L D+K Q
Sbjct: 393 NACANLADLKLGRQ 406
Score = 67.4 bits (163), Expect = 1e-09
Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSG 182
++HA I K+++ ++++ + L+D+Y+KCG + +++ FD M ++ +W+S+IT ++G
Sbjct: 172 QIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNG 231
Query: 183 FLDEAFKLFNSM----PEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYS 350
+A ++F M EPD+ + S+VS A E L+ R+ + D N+
Sbjct: 232 PAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLG 291
Query: 351 SAL 359
+AL
Sbjct: 292 NAL 294
Score = 61.2 bits (147), Expect = 8e-08
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Frame = +3
Query: 3 KVHARIIKTQF------ASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIIT 164
+ H +I+K F S+IF+ N LID+Y KCG ++D +F++M +D +W+++I
Sbjct: 406 QAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIV 465
Query: 165 ALTKSGFLDEAFKLFNSM----PEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHRE 320
++G+ A ++F M +PD + ++S + EE +F M E
Sbjct: 466 GYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTE 521
>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 628
Score = 204 bits (519), Expect = 6e-51
Identities = 89/133 (66%), Positives = 112/133 (84%)
Frame = +3
Query: 3 KVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSG 182
++HARIIKTQFA E+FIQNRLID Y KCGC D+RK+FD+MP K+ F+W++I++ L KSG
Sbjct: 40 RIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPEKNVFSWNAIVSTLVKSG 99
Query: 183 FLDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSALS 362
FLDE +LF SMPEPDQCSWNS+++GFAQHD FEEAL +FV+MHR+ F+LNEY++ S LS
Sbjct: 100 FLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLS 159
Query: 363 ACAGLVDMKTSVQ 401
ACAGL D+K Q
Sbjct: 160 ACAGLKDLKIGTQ 172
Score = 92.4 bits (228), Expect = 3e-17
Identities = 43/134 (32%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
Frame = +3
Query: 3 KVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKS 179
++HA ++K + ++ + N L+D+YAKCG + ++R +FD+MP ++ + S+++ K+
Sbjct: 273 EIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKT 332
Query: 180 GFLDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSAL 359
+ A LF M E + SWN++++G+ Q+ EEAL F + RE Y++ + L
Sbjct: 333 ASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLL 392
Query: 360 SACAGLVDMKTSVQ 401
+ACA L D++ Q
Sbjct: 393 NACANLADLQLGRQ 406
Score = 70.1 bits (170), Expect = 2e-10
Identities = 37/123 (30%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSG 182
++H ++K+QF ++++ + LID+Y+KCG + ++++FD M ++ +W+S+IT ++G
Sbjct: 172 QIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNG 231
Query: 183 FLDEAFKLFNSMP----EPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYS 350
EA ++F M EPD+ + S+VS A ++ LE + + D L ++ S
Sbjct: 232 PSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILS 291
Query: 351 SAL 359
+AL
Sbjct: 292 NAL 294
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Frame = +3
Query: 3 KVHARIIKTQFA------SEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIIT 164
+ HA ++K F S++F+ N LID+Y KCG +++ ++F+ M +D +W+++I
Sbjct: 406 QAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIV 465
Query: 165 ALTKSGFLDEAFKLFNSM----PEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHRE 320
++G+ EA LF M +PD + + + +E + F M E
Sbjct: 466 GYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCACSHAGLVQEGRKHFSSMTEE 521
>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 705
Score = 195 bits (496), Expect = 3e-48
Identities = 92/132 (69%), Positives = 109/132 (82%)
Frame = +3
Query: 6 VHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSGF 185
VHARIIKTQF+SEIFIQNRL+DVY KCG L+D+RK+FD M ++TF+W++++ ALTK G
Sbjct: 41 VHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGA 100
Query: 186 LDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSALSA 365
LDEA LF MPE DQCSWN+MVSGFAQ D FEEAL F V MH EDF+LNEYS+ SALSA
Sbjct: 101 LDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA 160
Query: 366 CAGLVDMKTSVQ 401
CAGL+D+ VQ
Sbjct: 161 CAGLMDLSIGVQ 172
Score = 96.3 bits (238), Expect = 2e-18
Identities = 43/134 (32%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Frame = +3
Query: 3 KVHARIIK-TQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKS 179
++HAR++K ++ +++ + N L+D+YAKC + ++R +FD+MP +D + S+++ K+
Sbjct: 273 QIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKA 332
Query: 180 GFLDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYSSAL 359
+ A +F++M E + SWN++++G+ Q+ EEA+ F+ + RE Y++ + L
Sbjct: 333 SSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLL 392
Query: 360 SACAGLVDMKTSVQ 401
+ACA L D+K Q
Sbjct: 393 NACANLADLKLGRQ 406
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIITALTKSG 182
++H I K++++ ++++ + L+D+Y+KC + +++ FD M ++ +W+S+IT ++G
Sbjct: 172 QIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNG 231
Query: 183 FLDEAFKLF----NSMPEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLLNEYSYS 350
+A ++F N EPD+ + S+ S A E L+ R+ + D N+
Sbjct: 232 PAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLG 291
Query: 351 SAL 359
+AL
Sbjct: 292 NAL 294
Score = 63.5 bits (153), Expect = 2e-08
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Frame = +3
Query: 3 KVHARIIKTQF------ASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKDTFTWDSIIT 164
+ H I+K F S+IF+ N LID+Y KCG ++D R +F++M +D +W+++I
Sbjct: 406 QAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIV 465
Query: 165 ALTKSGFLDEAFKLFNSM----PEPDQCSWNSMVSGFAQHDHFEEALEFFVRMHREDFLL 332
++G+ EA ++F M PD + ++S + EE +F M E L+
Sbjct: 466 GYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLV 525
Query: 333 ---NEYSYSSALSACAGLVD 383
+ Y+ L AG +D
Sbjct: 526 PVKDHYTCMVDLLGRAGCLD 545