BLASTX nr result
ID: Coptis24_contig00015928
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00015928
(831 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI39303.3| unnamed protein product [Vitis vinifera] 309 6e-82
ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containi... 309 6e-82
ref|XP_002521822.1| pentatricopeptide repeat-containing protein,... 276 5e-72
ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 256 4e-66
ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containi... 256 4e-66
>emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 309 bits (791), Expect = 6e-82
Identities = 150/216 (69%), Positives = 180/216 (83%), Gaps = 1/216 (0%)
Frame = -1
Query: 831 EKFIMQSGFENDAVMWRALLSACQVHGASVTGERVAKRVIELKPQAAASYVLLYNIYSDA 652
E FIM SGFE D VMWR+LLSAC+VH A+ TG+RVA+RVIEL+P+AAASYVLLYNIY+DA
Sbjct: 508 ESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDA 567
Query: 651 GIQLPATEIRDLMKERGVKKEPGLSWIQIGATVHSFVVGDRSHSKSPLIYKTLGEMLEKI 472
GIQ+PATEIR+LMK+RGVKKEPGLSWI++G VHSFV GDRSH S +IY L EMLE+I
Sbjct: 568 GIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEI 627
Query: 471 KKIGYVEKKPGFSASQQEQKD-FVANYHSEKLALALGIISLPQSAPIKIMKNLRVCQDCH 295
KK+ Y+++K AS+ + KD + +YHSEKLA+ GIISLP+SAP+++MKNLR C CH
Sbjct: 628 KKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCH 687
Query: 294 TTMKFVSRVDGREIILRDHIRFHRFRDGSCSCRDYW 187
TMK SR++ REIILRD IRFHRFRDGSCSC DYW
Sbjct: 688 ETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723
>ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13880-like
[Vitis vinifera]
Length = 802
Score = 309 bits (791), Expect = 6e-82
Identities = 150/216 (69%), Positives = 180/216 (83%), Gaps = 1/216 (0%)
Frame = -1
Query: 831 EKFIMQSGFENDAVMWRALLSACQVHGASVTGERVAKRVIELKPQAAASYVLLYNIYSDA 652
E FIM SGFE D VMWR+LLSAC+VH A+ TG+RVA+RVIEL+P+AAASYVLLYNIY+DA
Sbjct: 587 ESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDA 646
Query: 651 GIQLPATEIRDLMKERGVKKEPGLSWIQIGATVHSFVVGDRSHSKSPLIYKTLGEMLEKI 472
GIQ+PATEIR+LMK+RGVKKEPGLSWI++G VHSFV GDRSH S +IY L EMLE+I
Sbjct: 647 GIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEI 706
Query: 471 KKIGYVEKKPGFSASQQEQKD-FVANYHSEKLALALGIISLPQSAPIKIMKNLRVCQDCH 295
KK+ Y+++K AS+ + KD + +YHSEKLA+ GIISLP+SAP+++MKNLR C CH
Sbjct: 707 KKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCH 766
Query: 294 TTMKFVSRVDGREIILRDHIRFHRFRDGSCSCRDYW 187
TMK SR++ REIILRD IRFHRFRDGSCSC DYW
Sbjct: 767 ETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802
>ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539035|gb|EEF40632.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 793
Score = 276 bits (705), Expect = 5e-72
Identities = 132/217 (60%), Positives = 171/217 (78%), Gaps = 2/217 (0%)
Frame = -1
Query: 831 EKFIMQSGFENDAVMWRALLSACQVHGASVTGERVAKRVIELKPQAAASYVLLYNIYSDA 652
+ FI+ SGF + VMWR LLS C+++ VTG+ VA+++IEL PQ ++SYVLLYNIY+DA
Sbjct: 577 KNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDA 636
Query: 651 GIQLPATEIRDLMKERGVKKEPGLSWIQIGATVHSFVVGDRSHSKSPLIYKTLGEMLEKI 472
GI LPAT+IR+LMK+RG++KEPG SWI++G VHSFVVGD SH S +IYK L MLEK
Sbjct: 637 GIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLEKK 696
Query: 471 KKIGYVEKK-PGFSASQQEQKDFV-ANYHSEKLALALGIISLPQSAPIKIMKNLRVCQDC 298
+KIGY+++K + S +E K + N+HSEKLA++ GI+SLP SAP+K+MKNLRVC DC
Sbjct: 697 RKIGYIDQKIQNVTISTKEVKGTLGVNHHSEKLAVSFGIVSLPPSAPVKVMKNLRVCHDC 756
Query: 297 HTTMKFVSRVDGREIILRDHIRFHRFRDGSCSCRDYW 187
H TMK +S V+ REIILRD +RFH F++GSCSC DYW
Sbjct: 757 HATMKLISVVEKREIILRDSLRFHHFKEGSCSCNDYW 793
>ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g13880-like [Cucumis sativus]
Length = 839
Score = 256 bits (654), Expect = 4e-66
Identities = 123/215 (57%), Positives = 161/215 (74%)
Frame = -1
Query: 831 EKFIMQSGFENDAVMWRALLSACQVHGASVTGERVAKRVIELKPQAAASYVLLYNIYSDA 652
E I++ GFE++ VMWRALLSAC++H +VT +RVA++VIEL+P A+ASYVLLYNIY DA
Sbjct: 627 ESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIELEPLASASYVLLYNIYMDA 686
Query: 651 GIQLPATEIRDLMKERGVKKEPGLSWIQIGATVHSFVVGDRSHSKSPLIYKTLGEMLEKI 472
G +L A+++R LM+ER +KKEPGLSWIQIG V+SFV GDRSH S IY L EML
Sbjct: 687 GNKLAASKVRTLMEERRIKKEPGLSWIQIGDKVYSFVSGDRSHKNSGQIYAKLDEMLATT 746
Query: 471 KKIGYVEKKPGFSASQQEQKDFVANYHSEKLALALGIISLPQSAPIKIMKNLRVCQDCHT 292
K++ + G+ + + NYHSEKLA+A G++ L +SAP+++MKNLR+C DCH
Sbjct: 747 KRLDSAKDILGYKIEHEHLTN--VNYHSEKLAVAFGVLYLSESAPVRVMKNLRICLDCHM 804
Query: 291 TMKFVSRVDGREIILRDHIRFHRFRDGSCSCRDYW 187
TMK S V+ RE+I+RD +RFH F+DGSCSC DYW
Sbjct: 805 TMKLFSIVEKRELIVRDSVRFHHFKDGSCSCGDYW 839
>ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13880-like
[Cucumis sativus]
Length = 746
Score = 256 bits (654), Expect = 4e-66
Identities = 123/215 (57%), Positives = 161/215 (74%)
Frame = -1
Query: 831 EKFIMQSGFENDAVMWRALLSACQVHGASVTGERVAKRVIELKPQAAASYVLLYNIYSDA 652
E I++ GFE++ VMWRALLSAC++H +VT +RVA++VIEL+P A+ASYVLLYNIY DA
Sbjct: 534 ESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIELEPLASASYVLLYNIYMDA 593
Query: 651 GIQLPATEIRDLMKERGVKKEPGLSWIQIGATVHSFVVGDRSHSKSPLIYKTLGEMLEKI 472
G +L A+++R LM+ER +KKEPGLSWIQIG V+SFV GDRSH S IY L EML
Sbjct: 594 GNKLAASKVRTLMEERRIKKEPGLSWIQIGDKVYSFVSGDRSHKNSGQIYAKLDEMLATT 653
Query: 471 KKIGYVEKKPGFSASQQEQKDFVANYHSEKLALALGIISLPQSAPIKIMKNLRVCQDCHT 292
K++ + G+ + + NYHSEKLA+A G++ L +SAP+++MKNLR+C DCH
Sbjct: 654 KRLDSAKDILGYKIEHEHLTN--VNYHSEKLAVAFGVLYLSESAPVRVMKNLRICLDCHM 711
Query: 291 TMKFVSRVDGREIILRDHIRFHRFRDGSCSCRDYW 187
TMK S V+ RE+I+RD +RFH F+DGSCSC DYW
Sbjct: 712 TMKLFSIVEKRELIVRDSVRFHHFKDGSCSCGDYW 746