BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015878
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBG76268.1| OO_Ba0005L10-OO_Ba0081K17.19 [Oryza officinalis]       54   8e-11
gb|ABA95102.1| retrotransposon protein, putative, unclassified [...    53   7e-10
gb|AAX95395.1| Reverse transcriptase (RNA-dependent DNA polymera...    54   1e-09
gb|ABA95870.2| retrotransposon protein, putative, unclassified [...    55   1e-09
gb|ABA97820.2| retrotransposon protein, putative, unclassified [...    55   3e-09

>emb|CBG76268.1| OO_Ba0005L10-OO_Ba0081K17.19 [Oryza officinalis]
          Length = 1969

 Score = 53.9 bits (128), Expect(2) = 8e-11
 Identities = 31/82 (37%), Positives = 41/82 (50%)
 Frame = +2

Query: 11   DLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISRLGNRKHII 190
            D+IG IN    +     L  T +FTKWVET+PL   + K    F KE+II R G  + I 
Sbjct: 1681 DMIGQINPPSSKGHKYILVATDYFTKWVETVPLKKVDSKDAIQFVKEYIIYRFGLPQTIT 1740

Query: 191  SDGGIPFVNQHIAYMLEDCGIK 256
            +D G  FV+       +   IK
Sbjct: 1741 TDQGSIFVSDEFVQFADSMDIK 1762



 Score = 37.4 bits (85), Expect(2) = 8e-11
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 258  VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 374
            + S+PY  + NGQAE +NKTL +  I   ++EQP+ W T
Sbjct: 1764 LNSSPYYAQANGQAEASNKTLIK-LIKRKINEQPRQWHT 1801


>gb|ABA95102.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 2096

 Score = 53.1 bits (126), Expect(2) = 7e-10
 Identities = 30/82 (36%), Positives = 40/82 (48%)
 Frame = +2

Query: 11   DLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISRLGNRKHII 190
            D+IG IN    +     L  T + TKWVE +PL   + K    F KEHII R G  + I 
Sbjct: 1808 DMIGQINPPSSKGHKYILVATDYITKWVEAVPLKKVDSKDAIQFVKEHIIYRFGLPQTIT 1867

Query: 191  SDGGIPFVNQHIAYMLEDCGIK 256
            +D G  FV+       +  GI+
Sbjct: 1868 TDQGSIFVSDEFVRFADSMGIR 1889



 Score = 35.0 bits (79), Expect(2) = 7e-10
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 258  VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 374
            + S+PY  + NGQAE +NK+L +  I   + EQP+ W T
Sbjct: 1891 LNSSPYYAQANGQAEASNKSLIK-LIKRKIDEQPRQWHT 1928


>gb|AAX95395.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative [Oryza
            sativa Japonica Group] gi|108864313|gb|ABA92966.2|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 1427

 Score = 53.5 bits (127), Expect(2) = 1e-09
 Identities = 32/82 (39%), Positives = 40/82 (48%)
 Frame = +2

Query: 11   DLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISRLGNRKHII 190
            D+IG IN    +     L TT +FTKWVE IPL   +      F +EHII R G  + I 
Sbjct: 1139 DMIGMINPPSTKGHKFILVTTDYFTKWVEAIPLKKVDSVHAIRFVQEHIIYRFGIPQTIT 1198

Query: 191  SDGGIPFVNQHIAYMLEDCGIK 256
            +D G  FV        +  GIK
Sbjct: 1199 TDQGSIFVFDEFVQFADSMGIK 1220



 Score = 33.9 bits (76), Expect(2) = 1e-09
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 258  VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 374
            + S+PY  + NGQAE +NK+L + FI   + + P+ W T
Sbjct: 1222 LNSSPYYAQANGQAEASNKSLIK-FIKRKISDYPRQWHT 1259


>gb|ABA95870.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1179

 Score = 55.5 bits (132), Expect(2) = 1e-09
 Identities = 32/82 (39%), Positives = 40/82 (48%)
 Frame = +2

Query: 11   DLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISRLGNRKHII 190
            D+IG IN    +     L  T +FTKWVE IPL   +      F KEHII R G  + I 
Sbjct: 1052 DMIGQINPPFSKGHKFILVATDYFTKWVEAIPLKKVDPGDAIQFVKEHIIYRFGIPQTIT 1111

Query: 191  SDGGIPFVNQHIAYMLEDCGIK 256
            +D G  FV+       +  GIK
Sbjct: 1112 TDQGSIFVSDEFVQFADSMGIK 1133



 Score = 31.6 bits (70), Expect(2) = 1e-09
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 258  VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPTA 377
            + S+PY  + NGQAE +NK+L +  I   + + P+ W T+
Sbjct: 1135 LNSSPYYAQANGQAEVSNKSLIK-LIKRKIFDYPRQWHTS 1173


>gb|ABA97820.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1710

 Score = 54.7 bits (130), Expect(2) = 3e-09
 Identities = 32/82 (39%), Positives = 40/82 (48%)
 Frame = +2

Query: 11   DLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISRLGNRKHII 190
            D+IG IN    +     L  T +FTKWVE IPL   +      F KEHII R G  + I 
Sbjct: 1515 DMIGQINPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGDAIQFVKEHIIYRFGIPQTIT 1574

Query: 191  SDGGIPFVNQHIAYMLEDCGIK 256
            +D G  FV+       +  GIK
Sbjct: 1575 TDQGSIFVSDEFVRFADSMGIK 1596



 Score = 31.2 bits (69), Expect(2) = 3e-09
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 264  STPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 374
            S+PY  + NGQAE +NK+L +  I   + + P+ W T
Sbjct: 1598 SSPYYAQANGQAEASNKSLIK-LIKRKISDYPRQWHT 1633