BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015860
         (820 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    55   1e-11
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi...    55   1e-11
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...    46   5e-09
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...    42   4e-07

>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score = 54.7 bits (130), Expect(2) = 1e-11
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = -2

Query: 819 FEEAKEVVQRISYSCSTSEVVIARREILASCCVHQKTQLAGVAA*RLFQLE 667
           FEEA+ V+QR+  + S SE  +A R  L++CC H +TQ A VAA RLFQLE
Sbjct: 390 FEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLE 440



 Score = 40.8 bits (94), Expect(2) = 1e-11
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = -3

Query: 665 HSGAYVILYNMYAADGKQNDVKRIR 591
           HSGAYV+L NMYAA GK  D KR+R
Sbjct: 442 HSGAYVLLSNMYAALGKHEDAKRVR 466


>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score = 54.7 bits (130), Expect(2) = 1e-11
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = -2

Query: 819 FEEAKEVVQRISYSCSTSEVVIARREILASCCVHQKTQLAGVAA*RLFQLE 667
           FEEA+ V+QR+  + S SE  +A R  L++CC H +TQ A VAA RLFQLE
Sbjct: 390 FEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLE 440



 Score = 40.8 bits (94), Expect(2) = 1e-11
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = -3

Query: 665 HSGAYVILYNMYAADGKQNDVKRIR 591
           HSGAYV+L NMYAA GK  D KR+R
Sbjct: 442 HSGAYVLLSNMYAALGKHEDAKRVR 466


>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score = 45.8 bits (107), Expect(2) = 5e-09
 Identities = 23/50 (46%), Positives = 35/50 (70%)
 Frame = -2

Query: 816 EEAKEVVQRISYSCSTSEVVIARREILASCCVHQKTQLAGVAA*RLFQLE 667
           +EAKE++ ++  S S +E  IA R +L++CC H +T++A  AA RLF LE
Sbjct: 391 KEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLE 440



 Score = 41.2 bits (95), Expect(2) = 5e-09
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = -3

Query: 668 NHSGAYVILYNMYAADGKQNDVKRIR 591
           +HSGAYV+L N+YAA GKQ+ V+RIR
Sbjct: 441 HHSGAYVLLSNLYAAAGKQDHVRRIR 466


>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score = 41.6 bits (96), Expect(2) = 4e-07
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -3

Query: 668 NHSGAYVILYNMYAADGKQNDVKRIR*RRRQVASVSYSGRGNTLTDG 528
           NHSG YV+L N+YAA GK +D +R+R   R        G  +   DG
Sbjct: 442 NHSGVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVEIDG 488



 Score = 38.9 bits (89), Expect(2) = 4e-07
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -2

Query: 819 FEEAKEVVQRI-SYSCSTSEVVIARREILASCCVHQKTQLAGVAA*RLFQLES 664
           F EA  +++RI S S + SE  +A R  L++CC H + QLA  AA RL +LE+
Sbjct: 390 FGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLRLEN 442