BLASTX nr result

ID: Coptis24_contig00015745 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015745
         (648 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW60393.1| hypothetical protein ZEAMMB73_326542 [Zea mays]        105   2e-27
ref|XP_002451753.1| hypothetical protein SORBIDRAFT_04g007260 [S...   106   3e-27
ref|NP_001170122.1| uncharacterized protein LOC100384044 [Zea ma...   103   4e-27
gb|AFW66091.1| hypothetical protein ZEAMMB73_361265 [Zea mays]        103   1e-26
ref|NP_001043539.1| Os01g0609300 [Oryza sativa Japonica Group] g...   100   2e-26

>gb|AFW60393.1| hypothetical protein ZEAMMB73_326542 [Zea mays]
          Length = 1449

 Score =  105 bits (263), Expect(2) = 2e-27
 Identities = 46/79 (58%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
 Frame = +1

Query: 217  WYYWGCPISWTLYGLGASQYGDI-DTKMETGESVKDFLESYFGYKYESLGWISAGVVGYT 393
            WY W CP++WTLYGL ASQ+GDI D K+E GE VKDF++ +FG+ ++ LG+ +  VVG+T
Sbjct: 1371 WYSWACPVAWTLYGLVASQFGDITDVKLEDGEIVKDFIDRFFGFTHDHLGYAATAVVGFT 1430

Query: 394  VLFALVFAISIKKLNFQTR 450
            VLF+ +FA SIK  NFQ R
Sbjct: 1431 VLFSFMFAFSIKVFNFQIR 1449



 Score = 42.4 bits (98), Expect(2) = 2e-27
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 2    GMMAVGLTPNGXXXXXXXXXXXXXXXXXXGFVIARPQIPVWWR 130
            GMMAV +TPN                   GF+I RP+IP+WWR
Sbjct: 1328 GMMAVAMTPNSDIAALASTAFYAIWNIFAGFIIPRPRIPIWWR 1370


>ref|XP_002451753.1| hypothetical protein SORBIDRAFT_04g007260 [Sorghum bicolor]
            gi|241931584|gb|EES04729.1| hypothetical protein
            SORBIDRAFT_04g007260 [Sorghum bicolor]
          Length = 1442

 Score =  106 bits (264), Expect(2) = 3e-27
 Identities = 46/79 (58%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
 Frame = +1

Query: 217  WYYWGCPISWTLYGLGASQYGDI-DTKMETGESVKDFLESYFGYKYESLGWISAGVVGYT 393
            WY W CP++WTLYGL ASQ+GDI D ++E  E VKDF+  +FG+++++LG+++  VVG+T
Sbjct: 1364 WYSWACPVAWTLYGLVASQFGDITDVRLEDDEIVKDFVNRFFGFQHDNLGYVATAVVGFT 1423

Query: 394  VLFALVFAISIKKLNFQTR 450
            VLFA VFA SIK  NFQ R
Sbjct: 1424 VLFAFVFAFSIKVFNFQRR 1442



 Score = 41.6 bits (96), Expect(2) = 3e-27
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 2    GMMAVGLTPNGXXXXXXXXXXXXXXXXXXGFVIARPQIPVWWR 130
            GMMAV +TPN                   GF+I RP+IP+WWR
Sbjct: 1321 GMMAVAMTPNSDIAAIVSTAFYAIWNIFAGFLIPRPRIPIWWR 1363


>ref|NP_001170122.1| uncharacterized protein LOC100384044 [Zea mays]
           gi|224033649|gb|ACN35900.1| unknown [Zea mays]
          Length = 587

 Score =  103 bits (257), Expect(2) = 4e-27
 Identities = 44/78 (56%), Positives = 58/78 (74%)
 Frame = +1

Query: 217 WYYWGCPISWTLYGLGASQYGDIDTKMETGESVKDFLESYFGYKYESLGWISAGVVGYTV 396
           WY W CP++WTLYGL  SQ+GD+ T M+ G +VK F+E YFG+K+  LGW++A VV + V
Sbjct: 510 WYCWICPVAWTLYGLVVSQFGDVMTPMDDGRAVKVFVEDYFGFKHSWLGWVAAVVVAFAV 569

Query: 397 LFALVFAISIKKLNFQTR 450
           LFA +F  +I KLNFQ R
Sbjct: 570 LFATLFGFAIMKLNFQKR 587



 Score = 43.9 bits (102), Expect(2) = 4e-27
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   GMMAVGLTPNGXXXXXXXXXXXXXXXXXXGFVIARPQIPVWWR 130
           GMMAVGLTPN                   GF+I RP++P+WWR
Sbjct: 467 GMMAVGLTPNYHIAAIVSSAFYAIWNLFSGFIIPRPKVPIWWR 509


>gb|AFW66091.1| hypothetical protein ZEAMMB73_361265 [Zea mays]
          Length = 1443

 Score =  103 bits (258), Expect(2) = 1e-26
 Identities = 47/80 (58%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
 Frame = +1

Query: 217  WYYWGCPISWTLYGLGASQYGDI-DTKMET-GESVKDFLESYFGYKYESLGWISAGVVGY 390
            WY W CP++WTLYGL ASQ+GDI D ++E  GE VKDF+  +FG+++++LG+++  VVG+
Sbjct: 1364 WYSWACPVAWTLYGLVASQFGDIADIRLEDDGELVKDFVNRFFGFEHDNLGYVATAVVGF 1423

Query: 391  TVLFALVFAISIKKLNFQTR 450
            TVLFA VFA SIK  NFQ R
Sbjct: 1424 TVLFAFVFAFSIKVFNFQRR 1443



 Score = 41.6 bits (96), Expect(2) = 1e-26
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 2    GMMAVGLTPNGXXXXXXXXXXXXXXXXXXGFVIARPQIPVWWR 130
            GMMAV +TPN                   GF+I RP+IP+WWR
Sbjct: 1321 GMMAVAMTPNSDIAAIVSTAFYAIWNIFAGFLIPRPRIPIWWR 1363


>ref|NP_001043539.1| Os01g0609300 [Oryza sativa Japonica Group]
            gi|122241165|sp|Q0JLC5.1|PDR3_ORYSJ RecName:
            Full=Pleiotropic drug resistance protein 3
            gi|27368821|emb|CAD59568.1| PDR-like ABC transporter
            [Oryza sativa Japonica Group] gi|28144343|tpg|DAA00886.1|
            TPA_exp: PDR3 ABC transporter [Oryza sativa (japonica
            cultivar-group)] gi|113533070|dbj|BAF05453.1|
            Os01g0609300 [Oryza sativa Japonica Group]
          Length = 1457

 Score =  100 bits (250), Expect(2) = 2e-26
 Identities = 42/78 (53%), Positives = 55/78 (70%)
 Frame = +1

Query: 217  WYYWGCPISWTLYGLGASQYGDIDTKMETGESVKDFLESYFGYKYESLGWISAGVVGYTV 396
            WY W CP++WTLYGL  SQ+GDI+T ME G  VK F+E+YFG+K+  LGW++  V  +  
Sbjct: 1380 WYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAF 1439

Query: 397  LFALVFAISIKKLNFQTR 450
            LFA +F  +I K NFQ R
Sbjct: 1440 LFASLFGFAIMKFNFQKR 1457



 Score = 44.3 bits (103), Expect(2) = 2e-26
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +2

Query: 2    GMMAVGLTPNGXXXXXXXXXXXXXXXXXXGFVIARPQIPVWWR 130
            GMMAVGLTPN                   GFVI RP++P+WWR
Sbjct: 1337 GMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWR 1379


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