BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015718
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX95501.1| Retrotransposon gag protein, putative [Oryza sati...    65   7e-09
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]      63   9e-09
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]        63   2e-08
ref|XP_003528358.1| PREDICTED: uncharacterized protein LOC100775...    63   3e-08
ref|XP_002329042.1| predicted protein [Populus trichocarpa] gi|2...    63   3e-08

>gb|AAX95501.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
           gi|62734602|gb|AAX96711.1| retrotransposon protein,
           putative, Ty3-gypsy sub-class [Oryza sativa Japonica
           Group] gi|77550237|gb|ABA93034.1| retrotransposon
           protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 456

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 35/94 (37%), Positives = 53/94 (56%)
 Frame = +1

Query: 76  APHFVPKQYQQDLFIRLQNLKQQLSSVQQYTEQFQLLCTRAGLVETDEQRVGRYLNGLRK 255
           A  FVP+ Y + L+ RLQ LKQ   SV  Y ++ +LL +R G+ E DE  + R+LNGL  
Sbjct: 209 ARRFVPEHYTRSLYTRLQQLKQGDLSVDAYYKEMELLMSRTGVTENDEATMARFLNGLND 268

Query: 256 SIREALIMFEIEDMATAFKYALRAERVLSPGTTS 357
            ++E + +    D+ +    A R E+ L+   TS
Sbjct: 269 DVKERVEISYYYDIQSMVHIAQRVEQQLTSRHTS 302


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score = 63.2 bits (152), Expect(2) = 9e-09
 Identities = 31/85 (36%), Positives = 52/85 (61%)
 Frame = +1

Query: 85  FVPKQYQQDLFIRLQNLKQQLSSVQQYTEQFQLLCTRAGLVETDEQRVGRYLNGLRKSIR 264
           FVPK Y++DLF +LQNLKQ   SV +Y ++ +    RA + E +EQ + R+++GL ++I+
Sbjct: 222 FVPKHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQ 281

Query: 265 EALIMFEIEDMATAFKYALRAERVL 339
             +   +  ++      A +AER L
Sbjct: 282 RIVEFQQYRNLIELVHQASKAERQL 306



 Score = 21.2 bits (43), Expect(2) = 9e-09
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 2   LVW*DELNLRRVNQGYRRVCTWASMHR 82
           L+W +++   R   G   V +WA M R
Sbjct: 190 LIWWEQMLNEREEAGQGDVRSWAEMKR 216


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
 Frame = +1

Query: 85  FVPKQYQQDLFIRLQNLKQQLSSVQQYTEQFQLLCTRAGLVETDEQRVGRYLNGLRKSIR 264
           FVP  + +DL  +LQ L+Q   SV++Y +  Q+   R GLVE D+  + R++ GL + I+
Sbjct: 234 FVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRCGLVENDDAGMARFMGGLNREIQ 293

Query: 265 EALIMFEIEDMATAFKYALRAERVLSPGTTSAPYTGSASVITAITPVSAA--GTYSAARK 438
           + L   E   +   F  A +AER +     S     SA   ++ T  +AA   T +AA  
Sbjct: 294 DILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAGCASSWTSSNAAAPSTRAAAPS 353

Query: 439 C 441
           C
Sbjct: 354 C 354


>ref|XP_003528358.1| PREDICTED: uncharacterized protein LOC100775338 [Glycine max]
          Length = 528

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 33/121 (27%), Positives = 61/121 (50%)
 Frame = +1

Query: 88  VPKQYQQDLFIRLQNLKQQLSSVQQYTEQFQLLCTRAGLVETDEQRVGRYLNGLRKSIRE 267
           +P  Y+++L  +LQ L+Q   SV++Y +Q +LL  RAGL E +   + R+L+GL   +R+
Sbjct: 156 IPSYYERELMDKLQRLRQGSMSVEEYRQQMELLLLRAGLREEERTSIARFLSGLNMEVRD 215

Query: 268 ALIMFEIEDMATAFKYALRAERVLSPGTTSAPYTGSASVITAITPVSAAGTYSAARKCFE 447
            + +    D+    +  +R E+ L    +S  Y  ++++                 KCF+
Sbjct: 216 KVELLPYRDLDELVQLCIRVEQHLKRKPSSRSYDRTSNI-----------------KCFK 258

Query: 448 C 450
           C
Sbjct: 259 C 259


>ref|XP_002329042.1| predicted protein [Populus trichocarpa] gi|222839713|gb|EEE78036.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 35/103 (33%), Positives = 56/103 (54%)
 Frame = +1

Query: 85  FVPKQYQQDLFIRLQNLKQQLSSVQQYTEQFQLLCTRAGLVETDEQRVGRYLNGLRKSIR 264
           F+P  Y + L+ RLQNL+Q   SV  YT +F  L +R  + E +E RV RY+  LR   +
Sbjct: 169 FLPYNYTRTLYQRLQNLRQGNRSVDDYTTEFYQLVSRDAIAEDEESRVVRYIGRLRIQFQ 228

Query: 265 EALIMFEIEDMATAFKYALRAERVLSPGTTSAPYTGSASVITA 393
           + L MF++  ++ A + A++ E+ L    T     G +   T+
Sbjct: 229 DVLNMFDVLSVSDAHQRAVQLEKQLVRRNTGGLNFGGSGANTS 271