BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015645
         (256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]         66   9e-16
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc...    65   1e-15
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...    67   2e-15
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...    67   2e-15
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...    65   2e-15

>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score = 65.9 bits (159), Expect(2) = 9e-16
 Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = -3

Query: 245 RIDHLARGGLLGNLTSVKMETCESCLAGKATKKPF-GKAQRATYPLRLIHSDICGPMNSK 69
           R++ L R GLL +      ETCESCL GK TK PF G+++RA+  L L+H+D+CGPM+S 
Sbjct: 446 RMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSST 505

Query: 68  A 66
           A
Sbjct: 506 A 506



 Score = 42.4 bits (98), Expect(2) = 9e-16
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = -1

Query: 76  TARHGALYFITFTDDYTRYGTVYLM 2
           TAR G  YFITFTDD++RYG VYLM
Sbjct: 505 TARSGFGYFITFTDDFSRYGYVYLM 529


>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 829

 Score = 65.5 bits (158), Expect(2) = 1e-15
 Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = -3

Query: 245 RIDHLARGGLLGNLTSVKMETCESCLAGKATKKPF-GKAQRATYPLRLIHSDICGPMNSK 69
           R+  L R GLL +      ETCESCL GK TK PF G+++RA+  L L+H+D+CGPM+S 
Sbjct: 395 RMKKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLGLVHTDVCGPMSST 454

Query: 68  AWG 60
           A G
Sbjct: 455 ARG 457



 Score = 42.0 bits (97), Expect(2) = 1e-15
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = -1

Query: 76  TARHGALYFITFTDDYTRYGTVYLM 2
           TAR G  YFITFTDD++RYG VYLM
Sbjct: 454 TARGGFGYFITFTDDFSRYGYVYLM 478


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score = 67.4 bits (163), Expect(2) = 2e-15
 Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = -3

Query: 242 IDHLARGGLLGNLTSVKMETCESCLAGKATKKPF-GKAQRATYPLRLIHSDICGPMNSKA 66
           ++ L R GLL +      ETCESCL GK TK PF G+++RA+  LRL+H+D+CGPM+S A
Sbjct: 1   MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 65  WG 60
            G
Sbjct: 61  RG 62



 Score = 39.7 bits (91), Expect(2) = 2e-15
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = -1

Query: 76  TARHGALYFITFTDDYTRYGTVYLM 2
           TAR G  YFI FTDD++RYG VYLM
Sbjct: 59  TARGGFGYFIIFTDDFSRYGYVYLM 83


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score = 67.4 bits (163), Expect(2) = 2e-15
 Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = -3

Query: 242 IDHLARGGLLGNLTSVKMETCESCLAGKATKKPF-GKAQRATYPLRLIHSDICGPMNSKA 66
           ++ L R GLL +      ETCESCL GK TK PF G+++RA+  LRL+H+D+CGPM+S A
Sbjct: 1   MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 65  WG 60
            G
Sbjct: 61  RG 62



 Score = 39.7 bits (91), Expect(2) = 2e-15
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = -1

Query: 76  TARHGALYFITFTDDYTRYGTVYLM 2
           TAR G  YFI FTDD++RYG VYLM
Sbjct: 59  TARGGFGYFIIFTDDFSRYGYVYLM 83


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score = 65.1 bits (157), Expect(2) = 2e-15
 Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = -3

Query: 245  RIDHLARGGLLGNLTSVKMETCESCLAGKATKKPF-GKAQRATYPLRLIHSDICGPMNSK 69
            R++ L R GLL +L     ETCESCL GK TK PF G+++R +  L L+H+D+CGPM+S 
Sbjct: 927  RMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSERTSELLVLVHTDVCGPMSST 986

Query: 68   A 66
            A
Sbjct: 987  A 987



 Score = 41.6 bits (96), Expect(2) = 2e-15
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = -1

Query: 76   TARHGALYFITFTDDYTRYGTVYLM 2
            TAR G  YFITFTDD++RYG VYLM
Sbjct: 986  TARCGFGYFITFTDDFSRYGYVYLM 1010