BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015644
         (507 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...    83   6e-21
dbj|BAA22288.1| polyprotein [Oryza australiensis]                      81   7e-19
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]         82   1e-18
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...    79   7e-18
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]      79   7e-18

>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score = 83.2 bits (204), Expect(2) = 6e-21
 Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = +3

Query: 324 ESCLAGKATKKPF-GKAQRATYHLQLIHSDICGPMNVTARHGDLYFITFTDDYTRHGTVY 500
           ESC+ GK TK PF G+ +RA+  L LIH+D+CGPM+ TAR G  YFITFTDDY+R+G +Y
Sbjct: 561 ESCILGKMTKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIY 620

Query: 501 LM 506
           LM
Sbjct: 621 LM 622



 Score = 42.4 bits (98), Expect(2) = 6e-21
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
 Frame = +2

Query: 14  LLQESYVFNFSQNSLEISLNNSLIGHAYLMNSFMTLHLAQTEVF--------MSKMVGCQ 169
           L+ E Y F    +   I LN+   G+A ++N    L+L    +F         + M    
Sbjct: 467 LMTEGYKFIIEDHGCSIFLNDMFYGYAPVLNGLFILNLDDAPIFNINAKRLRPNNMNSTF 526

Query: 170 LWHARLGHIGHSRIDRL 220
           +WH RLGHI   R+ +L
Sbjct: 527 IWHCRLGHISEKRMKKL 543


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 81.3 bits (199), Expect(2) = 7e-19
 Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = +3

Query: 324 ESCLAGKATKKPF-GKAQRATYHLQLIHSDICGPMNVTARHGDLYFITFTDDYTRHGTVY 500
           ESCL GK TK PF G ++RA+  L L+H+D+CGPM+ TAR G  YFITFTDD++R+G +Y
Sbjct: 473 ESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIY 532

Query: 501 LM 506
           LM
Sbjct: 533 LM 534



 Score = 37.4 bits (85), Expect(2) = 7e-19
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
 Frame = +2

Query: 14  LLQESYVFNFSQNSLEISLNNSLIGHAYLMNSFMTLHLAQTEVF--------MSKMVGCQ 169
           L  E Y F    N   I L +    HA L+N    L+L  + ++         + +    
Sbjct: 379 LQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQLSNDINPTF 438

Query: 170 LWHARLGHIGHSRIDRL 220
           +WH RLGHI   R+++L
Sbjct: 439 IWHCRLGHINKKRMEKL 455


>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score = 82.4 bits (202), Expect(2) = 1e-18
 Identities = 39/62 (62%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
 Frame = +3

Query: 324 ESCLAGKATKKPF-GKAQRATYHLQLIHSDICGPMNVTARHGDLYFITFTDDYTRHGTVY 500
           ESCL GK TK PF G+++RA+  L L+H+D+CGPM+ TAR G  YFITFTDD++R+G VY
Sbjct: 468 ESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSSTARSGFGYFITFTDDFSRYGYVY 527

Query: 501 LM 506
           LM
Sbjct: 528 LM 529



 Score = 35.4 bits (80), Expect(2) = 1e-18
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
 Frame = +2

Query: 14  LLQESYVFNFSQNSLEISLNNSLIGHAYLMNSFMTLHLAQTEVFM--------SKMVGCQ 169
           L  E Y F    N   +  N+    HA +MN    ++L    V+         + +    
Sbjct: 374 LQAEGYGFRSVDNGCSVYYNDIFYFHAPMMNGLYIVNLDGCSVYNINAKRQRPNDLNPTF 433

Query: 170 LWHARLGHIGHSRIDRL 220
           +WH RLGHI   R+++L
Sbjct: 434 IWHCRLGHINEKRMEKL 450


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1073

 Score = 79.3 bits (194), Expect(2) = 7e-18
 Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = +3

Query: 324 ESCLAGKATKKPF-GKAQRATYHLQLIHSDICGPMNVTARHGDLYFITFTDDYTRHGTVY 500
           ESCL GK TK PF G+++RA+  L L+H+D+CGPM+ TAR G  YFITFTDD++R G VY
Sbjct: 565 ESCLLGKMTKAPFTGQSKRASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSRCGYVY 624

Query: 501 LM 506
           LM
Sbjct: 625 LM 626



 Score = 35.8 bits (81), Expect(2) = 7e-18
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
 Frame = +2

Query: 14  LLQESYVFNFSQNSLEISLNNSLIGHAYLMNSFMTLHLAQTEVFM--------SKMVGCQ 169
           L  E Y F    N   +  N+    HA +MN    ++L    V+         + +    
Sbjct: 471 LQAEGYGFRSMDNGCSVYYNDLFYFHAPMMNGLYIVNLDGCSVYNINAKRQHPNDLNPTF 530

Query: 170 LWHARLGHIGHSRIDRL 220
           +WH RLGHI   R+++L
Sbjct: 531 IWHCRLGHINEKRMEKL 547


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score = 79.3 bits (194), Expect(2) = 7e-18
 Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = +3

Query: 324 ESCLAGKATKKPF-GKAQRATYHLQLIHSDICGPMNVTARHGDLYFITFTDDYTRHGTVY 500
           ESCL GK TK PF G+++RA+  L L+H+D+CGPM+ TAR G  YFITFTDD++R G VY
Sbjct: 565 ESCLLGKMTKAPFTGQSKRASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSRCGYVY 624

Query: 501 LM 506
           LM
Sbjct: 625 LM 626



 Score = 35.8 bits (81), Expect(2) = 7e-18
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
 Frame = +2

Query: 14  LLQESYVFNFSQNSLEISLNNSLIGHAYLMNSFMTLHLAQTEVFM--------SKMVGCQ 169
           L  E Y F    N   +  N+    HA +MN    ++L    V+         + +    
Sbjct: 471 LQAEGYGFRSMDNGCSVYYNDLFYFHAPMMNGLYIVNLDGCSVYNINAKRQHPNDLNPTF 530

Query: 170 LWHARLGHIGHSRIDRL 220
           +WH RLGHI   R+++L
Sbjct: 531 IWHCRLGHINEKRMEKL 547