BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015643
         (1180 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   178   3e-42
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   176   8e-42
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   174   4e-41
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...   170   7e-40
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   169   1e-39

>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  178 bits (451), Expect = 3e-42
 Identities = 108/365 (29%), Positives = 181/365 (49%), Gaps = 12/365 (3%)
 Frame = -3

Query: 1079 WQDLSSL--NPSAPWVVVGDFNVVLQYAEKKGGLIPRRAVMSEFYDWYNVCNLQESSFVG 906
            W  +  L  NP+ PW++ GDFN +L   EK+GG +  ++ M EF      C L +  F G
Sbjct: 364  WTTMRGLIDNPTTPWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDLGFEG 423

Query: 905  SRYTWCNNQHGQ-GRIVSKLDRIFFNQAWLQKFPEWRYRVDSRAGSDHAPLI----GGMA 741
              +TW N+ H Q G I  +LDR   N  W   FP  R        SDH P+I    G   
Sbjct: 424  DAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNK 483

Query: 740  NIP-RPSNVPFRFNKAWISHESFLDLMKTSWLHYIAGTPIFRVGKKLKMLKEVLKGWNTN 564
             +  R  +  FRF  AW+  E F +++K +W    AG     V   L  +   L  W++N
Sbjct: 484  GVRGRNGHNDFRFEAAWLEEEKFKEVVKEAW-DVSAGLQGLPVHASLAGVAAGLSSWSSN 542

Query: 563  VFGNIEDNIKKAKDNLALAQEAADTNPTDLNILNDMGSKEQAL----DQAYKAKSIHWKL 396
            V G++E  +KK K  L    E     P    I  D   +E+ L    ++  +   I+WK 
Sbjct: 543  VLGDLEKRVKKVKKEL----ETCRRQP----ISRDQVVREEVLRYRLEKLEQQVDIYWKQ 594

Query: 395  KSKVSWLSDSERNSAYFHRVCNIKQAKSMITEMKTEDGNVLFTQQEIAQHIVQYYTEKFQ 216
            ++  +WL+  +RN+++FH  C+ ++ ++ I +++ EDG+ +  +++    I++++ + F 
Sbjct: 595  RAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQLFT 654

Query: 215  YKEVKIDDALTNLIPKRVTSDMNEMLCSIPCDIEIFEAIKSSNADSSPGPDGYQGCFYVQ 36
                +    L +++ ++V+  MNE L +     E+ EA+ +     +PGPDG    FY  
Sbjct: 655  SNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKA 714

Query: 35   CWDII 21
            CWD++
Sbjct: 715  CWDVV 719


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  176 bits (447), Expect = 8e-42
 Identities = 116/410 (28%), Positives = 195/410 (47%), Gaps = 22/410 (5%)
 Frame = -3

Query: 1172 QASSQHITVMVNNCVISAVHANCLMVNIRALWQDLSSLNP--SAPWVVVGDFNVVLQYAE 999
            Q  +  I+   +   ++AV+A+   +  R LW +L++L      PW+ +GDFN VL   E
Sbjct: 87   QCIALEISCHQSTVYVAAVYASTFYLKRRQLWAELTNLQGCFQGPWLFIGDFNAVLGAHE 146

Query: 998  KKGGLIPRRAVMSEFYDWYNVCNLQESSFVGSRYTWCNNQHGQGRIVSKLDRIFFNQAWL 819
            K+    P      +F +W N   L     +G+ YTW N + G   +  +LDR   N+ W+
Sbjct: 147  KRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFYTWSNGRLGSDNVALRLDRAICNEEWV 206

Query: 818  QKFPEWRYRVDSRAG--------SDHAPLIGGMANIPRPSNVPFRFNKAWISHESFLDLM 663
                 WR    S  G        SDH PL+  M       +  F+F K W  HE    ++
Sbjct: 207  NF---WRSSSCSALGNSALVRHQSDHHPLLMSMDFCTSQRSGNFKFFKTWTEHEDCRRIV 263

Query: 662  KTSWLHYIAGTPIFRVGKKLKMLKEVLKGWNTNVFGNIEDNIKKAKDNLALAQEAADTNP 483
              +W  +  G  + R+  KLK +K+V + WN  VFG+++  ++ A + +   Q+      
Sbjct: 264  AENWSKHTRGHGMTRLQAKLKHMKQVFRHWNRTVFGDVDRKVRMAVEEVNRIQQ------ 317

Query: 482  TDLNILNDMGSKEQALDQAYKA-----KSIH-----WKLKSKVSWLSDSERNSAYFHRVC 333
                I++ +G  +Q   Q  +A     K++H     W+ K +       +RN+AYFHR+ 
Sbjct: 318  ----IIDSVGFSDQLYAQELEAHLILTKALHYQDELWREKLRDQRFIHGDRNTAYFHRIS 373

Query: 332  NIKQAKSMITEMKTEDGNVLFTQ-QEIAQHIVQYYTEKFQYKEVKI-DDALTNLIPKRVT 159
             ++  K+ I+ +  +DG+ + T    I  H++ Y+   F      I +D + + IP  V+
Sbjct: 374  KVRATKNTISFL--QDGDAVITDPARIEVHVLNYFQAIFSVDNSCIQNDLVVDTIPSLVS 431

Query: 158  SDMNEMLCSIPCDIEIFEAIKSSNADSSPGPDGYQGCFYVQCWDIIIKDV 9
            +  N  L  +P   E+  A+ + N D +PGP+G+ G FY   WDI+  DV
Sbjct: 432  NVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADV 481


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  174 bits (441), Expect = 4e-41
 Identities = 112/377 (29%), Positives = 191/377 (50%), Gaps = 8/377 (2%)
 Frame = -3

Query: 1133 CVISAVHANCLMVNIRALWQDLSSLNP--SAPWVVVGDFNVVLQYAEKKGGLIPRRAVMS 960
            C I+ ++ N      RA W+ + S  P  S PW+V+GDFN VL  +EK GG  P    + 
Sbjct: 705  CKITWMYGNPHDNEKRAFWRLMYSRFPVQSLPWLVLGDFNEVLDPSEKWGGGPPLPWRIK 764

Query: 959  EFYDWYNVCNLQESSFVGSRYTWCNNQHGQGRIVSKLDRIFFNQAWLQKFPEWRYRVDSR 780
             F D+ N  +L++  F G  ++W   +HG+  I  +LDR   N AW    P  +     +
Sbjct: 765  LFRDFLNNGHLRDLHFKGPGFSWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPK 824

Query: 779  AGSDHAPLIGGMANIPRPSNVP--FRFNKAWISHESFLDLMKTSWLHYIAGTPIFRVGKK 606
             GSDH PL+  + + P+  N    FRF + W +HE + D+++ SW     G+ +    + 
Sbjct: 825  IGSDHRPLL--LDSNPKMLNKTRLFRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRN 882

Query: 605  LKMLKEVLKGWNTNVFGNIEDNIKKAKDNLALAQEAADTNPTD----LNILNDMGSKEQA 438
            L    + LK W+   F N    +    D L+  ++   +NP D    +NIL D  +K   
Sbjct: 883  LLSCGKALKMWSKEKFSNPSVQVA---DLLSDIEKLHQSNPPDAHHQINILTDQVTKLWT 939

Query: 437  LDQAYKAKSIHWKLKSKVSWLSDSERNSAYFHRVCNIKQAKSMITEMKTEDGNVLFTQQE 258
             D+ Y      W  +S+V+WL   ++NS++FH+    ++  + I  +K + GN L ++ +
Sbjct: 940  QDEMY------WHQRSRVNWLKLGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEAD 993

Query: 257  IAQHIVQYYTEKFQYKEVKIDDALTNLIPKRVTSDMNEMLCSIPCDIEIFEAIKSSNADS 78
            +A   + Y+T  +Q    +  + + + +   VT++MN++L S    +E+ +A+    A  
Sbjct: 994  VALQFLDYFTALYQSNGPQQWEEVLDFVDTAVTAEMNKILSSPVSLLEVKKAVFDLGATK 1053

Query: 77   SPGPDGYQGCFYVQCWD 27
            +PGPDG+ G FY   W+
Sbjct: 1054 APGPDGFSGIFYQNQWE 1070


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score =  170 bits (430), Expect = 7e-40
 Identities = 109/390 (27%), Positives = 184/390 (47%), Gaps = 5/390 (1%)
 Frame = -3

Query: 1157 HITVMVNNCVISAVHANCLMVNIRALWQDLSSL--NPSAPWVVVGDFNVVLQYAEKKGGL 984
            H+T    +  +S V+ +        LWQ L  +  N +A W++VGDFN +L  AEK GG 
Sbjct: 472  HVTFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGP 531

Query: 983  IPRRAVMSEFYDWYNVCNLQESSFVGSRYTWCNNQHGQGRIVSKLDRIFFNQAWLQKFPE 804
            +        F +  + C++++    G R++W   +H    +   LDR+F N AW   FP 
Sbjct: 532  MREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHTH-TVKCCLDRVFINSAWTATFPY 590

Query: 803  WRYRVDSRAGSDHAP-LIGGMANIPRPSNVPFRFNKAWISHESFLDLMKTSWL--HYIAG 633
                     GSDH P L+    + PR S + FRF+   I   +F  +++TSW        
Sbjct: 591  AEIEFLDFTGSDHKPVLVHFNESFPRRSKL-FRFDNRLIDIPTFKRIVQTSWRTNRNSRS 649

Query: 632  TPIFRVGKKLKMLKEVLKGWNTNVFGNIEDNIKKAKDNLALAQEAADTNPTDLNILNDMG 453
            TPI    +++   ++ +         N E  IKK + +L  A E+  T   D  ++  + 
Sbjct: 650  TPIT---ERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMES--TRRVDRQLIPQL- 703

Query: 452  SKEQALDQAYKAKSIHWKLKSKVSWLSDSERNSAYFHRVCNIKQAKSMITEMKTEDGNVL 273
              +++L +A+  + I+WK KS+  W+ + ++N+ YFH     + +++ +  +  + G + 
Sbjct: 704  --QESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMF 761

Query: 272  FTQQEIAQHIVQYYTEKFQYKEVKIDDALTNLIPKRVTSDMNEMLCSIPCDIEIFEAIKS 93
               +EI  H   ++T  F    +K+           VT+ +N  L     D EI++AI  
Sbjct: 762  TGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQ 821

Query: 92   SNADSSPGPDGYQGCFYVQCWDIIIKDVCM 3
               D +PGPDG    FY  CWDI+  DV +
Sbjct: 822  IGDDKAPGPDGLTARFYKNCWDIVGYDVIL 851


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  169 bits (429), Expect = 1e-39
 Identities = 109/390 (27%), Positives = 184/390 (47%), Gaps = 5/390 (1%)
 Frame = -3

Query: 1157 HITVMVNNCVISAVHANCLMVNIRALWQDLSSL--NPSAPWVVVGDFNVVLQYAEKKGGL 984
            H+T    +  +S V+ +        LWQ L  +  N +A W++VGDFN +L  AEK GG 
Sbjct: 246  HVTFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGP 305

Query: 983  IPRRAVMSEFYDWYNVCNLQESSFVGSRYTWCNNQHGQGRIVSKLDRIFFNQAWLQKFPE 804
            +        F +  + C++++    G R++W   +H    +   LDR+F N AW   FP 
Sbjct: 306  MREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHTH-TVKCCLDRVFINSAWTATFPY 364

Query: 803  WRYRVDSRAGSDHAP-LIGGMANIPRPSNVPFRFNKAWISHESFLDLMKTSWL--HYIAG 633
                     GSDH P L+    + PR S + FRF+   I   +F  +++TSW        
Sbjct: 365  AETEFLDFTGSDHKPVLVHFNESFPRRSKL-FRFDNRLIDIPTFKRIVQTSWRTNRNSRS 423

Query: 632  TPIFRVGKKLKMLKEVLKGWNTNVFGNIEDNIKKAKDNLALAQEAADTNPTDLNILNDMG 453
            TPI    +++   ++ +         N E  IKK + +L  A E+  T   D  ++  + 
Sbjct: 424  TPIT---ERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMES--TRRVDRQLIPQL- 477

Query: 452  SKEQALDQAYKAKSIHWKLKSKVSWLSDSERNSAYFHRVCNIKQAKSMITEMKTEDGNVL 273
              +++L +A+  + I+WK KS+  W+ + ++N+ YFH     + +++ +  +  + G + 
Sbjct: 478  --QESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMF 535

Query: 272  FTQQEIAQHIVQYYTEKFQYKEVKIDDALTNLIPKRVTSDMNEMLCSIPCDIEIFEAIKS 93
               +EI  H   ++T  F    +K+           VT+ +N  L     D EI++AI  
Sbjct: 536  TGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQ 595

Query: 92   SNADSSPGPDGYQGCFYVQCWDIIIKDVCM 3
               D +PGPDG    FY  CWDI+  DV +
Sbjct: 596  IGDDKAPGPDGLTARFYKNCWDIVGYDVIL 625