BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015555
         (534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    73   3e-11
ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    72   5e-11
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    71   1e-10
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    69   4e-10
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    69   4e-10

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
 Frame = -3

Query: 385  DLEVLKAWKLPIKLRRAPRILEC*WVAPPSTMIKVNADGCSRGNPGNSGWDTLLRDSTSK 206
            D  +L+ + +  + R+   I+   W  P   ++KVN DG   G  G +    L RDS+  
Sbjct: 991  DSAILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGS 1048

Query: 205  VIGAYIGGLGIATNFIAESFAIVEGILKAVELGWKLIWVESDSTAAVKSFQNDQ-VHWQI 29
             +GA+   +G+A+ F AE+ A +  +  A   GW+ +W+ESDST+A+  F N   V W +
Sbjct: 1049 FLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLL 1108

Query: 28   RAAW 17
            R  W
Sbjct: 1109 RNRW 1112


>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 37/87 (42%), Positives = 49/87 (56%)
 Frame = -3

Query: 334 PRILEC*WVAPPSTMIKVNADGCSRGNPGNSGWDTLLRDSTSKVIGAYIGGLGIATNFIA 155
           P+I    W  PP + IK+N++G +RG PG +G   L R+    V G +I  L     F+A
Sbjct: 2   PKIFTIKWHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRGVVKGCFIVPLSTTYAFVA 61

Query: 154 ESFAIVEGILKAVELGWKLIWVESDST 74
           E  A + GI KA   GW  IW+ESDST
Sbjct: 62  EIKAAIYGIDKAYNFGWNKIWLESDST 88


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 1/128 (0%)
 Frame = -3

Query: 397 NSIRDLEVLKAWKLPIKLRRAPRILEC*WVAPPSTMIKVNADGCSRGNPGNSGWDTLLRD 218
           +S++D ++ + + +P K  R     E  WV P    +K+N DG   G+P       + R 
Sbjct: 217 SSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRA 276

Query: 217 STSKVIGAYIGGLGIATNFIAESFAIVEGILKAVELGWKLIWVESDSTAAVKSFQ-NDQV 41
           S +   GA+   +G AT   AE  A +  I KA EL    IW+E+DS   +++F  N  V
Sbjct: 277 SQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGV 336

Query: 40  HWQIRAAW 17
            W++   W
Sbjct: 337 PWKMHIRW 344


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
 Frame = -3

Query: 400 NNSIRDLEVLKAWKLPIKLRRAPRILEC*WVAPPSTMIKVNADGCSRGNPGNSGWDTLLR 221
           N++++D +V K + +P K++R    L+  W  P   ++K+N DG S G         ++R
Sbjct: 187 NSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIR 246

Query: 220 DSTSKVIGAYIGGLGIATNFIAESFAIVEGILKAVELGWKLIWVESDSTAAVKSFQND-Q 44
           DS    +GA    +G AT   AE  A +  + KA E+    + +E+DS   V +F     
Sbjct: 247 DSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLG 306

Query: 43  VHWQIRAAW 17
           V WQ+RA W
Sbjct: 307 VPWQMRARW 315


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
 Frame = -3

Query: 400 NNSIRDLEVLKAWKLPIKLRRAPRILEC*WVAPPSTMIKVNADGCSRGNPGNSGWDTLLR 221
           N++++D +V K + +P K++R    L+  W  P   ++K+N DG S G         ++R
Sbjct: 24  NSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIR 83

Query: 220 DSTSKVIGAYIGGLGIATNFIAESFAIVEGILKAVELGWKLIWVESDSTAAVKSFQND-Q 44
           DS    +GA    +G AT   AE  A +  + KA E+    + +E+DS   V +F     
Sbjct: 84  DSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLG 143

Query: 43  VHWQIRAAW 17
           V WQ+RA W
Sbjct: 144 VPWQMRARW 152