BLASTX nr result
ID: Coptis24_contig00015529
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00015529
(515 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containi... 216 2e-54
emb|CBI30808.3| unnamed protein product [Vitis vinifera] 216 2e-54
ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containi... 214 6e-54
ref|XP_002519753.1| pentatricopeptide repeat-containing protein,... 206 2e-51
ref|XP_002331875.1| predicted protein [Populus trichocarpa] gi|2... 199 1e-49
>ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 216 bits (550), Expect = 2e-54
Identities = 102/171 (59%), Positives = 132/171 (77%)
Frame = -3
Query: 513 SASLITFYAHCTLVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGT 334
SA+LITFYA+C +++SL+VF L NVV+WTAL+TGYGLN KHE+AL+VF M+ G
Sbjct: 241 SAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGV 300
Query: 333 MPNQFTFASALKSCSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGIT 154
+PNQ +F SAL SC L+ALD G+ +HT +KLGL+ DVFVGNSLIVMY CG + DG+
Sbjct: 301 LPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVV 360
Query: 153 IFNNMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITYVGL 1
IF +SK+N+VSWNS+IVGCAQ+G G +L F+QM+ + V PDEIT+ GL
Sbjct: 361 IFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGL 411
Score = 88.2 bits (217), Expect = 6e-16
Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 4/165 (2%)
Frame = -3
Query: 492 YAHCT--LVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGT--MPN 325
Y +C V++ L++F++ NV+ WT++I G + + EEAL +F M+ G P
Sbjct: 143 YGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPT 202
Query: 324 QFTFASALKSCSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGITIFN 145
T+ + +C+ AL +G +H KLG D ++ +LI Y C + D + +F+
Sbjct: 203 SSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFH 262
Query: 144 NMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITY 10
N+V W +++ G N +L++F +M+ V P++ ++
Sbjct: 263 GKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSF 307
Score = 68.6 bits (166), Expect = 5e-10
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 29/195 (14%)
Frame = -3
Query: 507 SLITFYAHCTLVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGTMP 328
S+IT + +D + VF+ +V ++T +ITGY N + + AL++FY M + +
Sbjct: 16 SMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVV- 74
Query: 327 NQFTFASALKSCSELDALDRGKGLHTRT---------------IKLG-LDV--------- 223
++ S +K C + L + L ++ G ++V
Sbjct: 75 ---SWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMP 131
Query: 222 --DVFVGNSLIVMYTECGCVGDGITIFNNMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQ 49
D+ NS+I Y G V DG+ +F M RN++SW S+I G Q+G +L LF Q
Sbjct: 132 FRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 191
Query: 48 MI--NAEVPPDEITY 10
M+ EV P TY
Sbjct: 192 MMGCGVEVKPTSSTY 206
>emb|CBI30808.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 216 bits (550), Expect = 2e-54
Identities = 102/171 (59%), Positives = 132/171 (77%)
Frame = -3
Query: 513 SASLITFYAHCTLVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGT 334
SA+LITFYA+C +++SL+VF L NVV+WTAL+TGYGLN KHE+AL+VF M+ G
Sbjct: 225 SAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGV 284
Query: 333 MPNQFTFASALKSCSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGIT 154
+PNQ +F SAL SC L+ALD G+ +HT +KLGL+ DVFVGNSLIVMY CG + DG+
Sbjct: 285 LPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVV 344
Query: 153 IFNNMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITYVGL 1
IF +SK+N+VSWNS+IVGCAQ+G G +L F+QM+ + V PDEIT+ GL
Sbjct: 345 IFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGL 395
Score = 88.2 bits (217), Expect = 6e-16
Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 4/165 (2%)
Frame = -3
Query: 492 YAHCT--LVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGT--MPN 325
Y +C V++ L++F++ NV+ WT++I G + + EEAL +F M+ G P
Sbjct: 127 YGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPT 186
Query: 324 QFTFASALKSCSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGITIFN 145
T+ + +C+ AL +G +H KLG D ++ +LI Y C + D + +F+
Sbjct: 187 SSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFH 246
Query: 144 NMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITY 10
N+V W +++ G N +L++F +M+ V P++ ++
Sbjct: 247 GKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSF 291
>ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Cucumis sativus]
gi|449533166|ref|XP_004173548.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Cucumis sativus]
Length = 712
Score = 214 bits (545), Expect = 6e-54
Identities = 100/171 (58%), Positives = 129/171 (75%)
Frame = -3
Query: 513 SASLITFYAHCTLVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGT 334
SASLI+FYA+C L+DN+ +F DN+ NVV+WTAL+TGYGLN +H +AL+VF GM+
Sbjct: 277 SASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSV 336
Query: 333 MPNQFTFASALKSCSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGIT 154
+PNQ + SAL SC L+A+DRG+ +H KLGL+ D+FV NSL+VMYT+CG + DGI
Sbjct: 337 LPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIA 396
Query: 153 IFNNMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITYVGL 1
+F MS++N+VSWNSIIVGCAQ+G G +L LF QMI V PDEIT GL
Sbjct: 397 VFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGL 447
Score = 80.5 bits (197), Expect = 1e-13
Identities = 46/152 (30%), Positives = 81/152 (53%)
Frame = -3
Query: 474 VDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGTMPNQFTFASALKS 295
V++++++FE NV+ WT++I G N + EAL VF+ M+ S + T A AL +
Sbjct: 190 VEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSS-TLACALTA 248
Query: 294 CSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGITIFNNMSKRNLVSW 115
C+ + G +H +K G + ++ SLI Y C + + +IFN+ RN+V W
Sbjct: 249 CANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVW 308
Query: 114 NSIIVGCAQNGHGTLSLELFDQMINAEVPPDE 19
+++ G N T +L++F M+ V P++
Sbjct: 309 TALLTGYGLNCRHTDALQVFKGMMRMSVLPNQ 340
Score = 59.3 bits (142), Expect = 3e-07
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Frame = -3
Query: 504 LITFYAHCTLVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGTMPN 325
L++F+ +D + +F V ++T +I GY + E+AL++FY M + +
Sbjct: 56 LLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISW 115
Query: 324 QFTFASALK------SCSELDALDRGKGLHTRTIKLGL-----------------DVDVF 214
LK +C+ D + + TI GL DV
Sbjct: 116 NSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKDVT 175
Query: 213 VGNSLIVMYTECGCVGDGITIFNNMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMI 43
NS++ + G V D I +F M RN++SW S+I G NG +L +F +M+
Sbjct: 176 AWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKML 232
>ref|XP_002519753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223541170|gb|EEF42726.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 562
Score = 206 bits (524), Expect = 2e-51
Identities = 103/171 (60%), Positives = 124/171 (72%)
Frame = -3
Query: 513 SASLITFYAHCTLVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGT 334
SASLITFY++C V N+ +VF + L NVV+WTAL+TG LNSKHE+AL VF MI G
Sbjct: 336 SASLITFYSNCKQVKNAHQVFNETLSKNVVIWTALLTGCELNSKHEDALRVFSDMIKMGV 395
Query: 333 MPNQFTFASALKSCSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGIT 154
PNQ TF SA SC L+ALDRGK +HT T KLGL+ DVFVGNSL+VMY ECG V D +
Sbjct: 396 FPNQSTFISAFNSCRGLEALDRGKEIHTVTAKLGLETDVFVGNSLVVMYNECGNVNDAVA 455
Query: 153 IFNNMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITYVGL 1
+F + ++N VSWNSIIVG +Q+GHG +L F+QMI V PDEIT GL
Sbjct: 456 VFKKIKEKNDVSWNSIIVGSSQHGHGIWALIFFNQMIRTCVDPDEITLTGL 506
Score = 101 bits (252), Expect = 6e-20
Identities = 55/167 (32%), Positives = 85/167 (50%)
Frame = -3
Query: 507 SLITFYAHCTLVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGTMP 328
++I Y + + L +FE NV+ WT++I G N K EEAL +F M+ SG P
Sbjct: 237 AMIFGYCGNRRIADGLNLFEKMPCRNVISWTSMIGGLDQNGKSEEALILFGKMMDSGVKP 296
Query: 327 NQFTFASALKSCSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGITIF 148
T+A L +C+ + G +H R KLG D F+ SLI Y+ C V + +F
Sbjct: 297 TSTTYACVLTACANAMDFNMGVQVHGRVSKLGYKSDEFISASLITFYSNCKQVKNAHQVF 356
Query: 147 NNMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITYV 7
N +N+V W +++ GC N +L +F MI V P++ T++
Sbjct: 357 NETLSKNVVIWTALLTGCELNSKHEDALRVFSDMIKMGVFPNQSTFI 403
>ref|XP_002331875.1| predicted protein [Populus trichocarpa] gi|222875393|gb|EEF12524.1|
predicted protein [Populus trichocarpa]
Length = 675
Score = 199 bits (507), Expect = 1e-49
Identities = 94/171 (54%), Positives = 126/171 (73%)
Frame = -3
Query: 513 SASLITFYAHCTLVDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGT 334
S SLITFYA+C ++++ K+F + L NVV WTAL+T Y N+KH++AL VF M G
Sbjct: 240 SVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGA 299
Query: 333 MPNQFTFASALKSCSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGIT 154
+PNQ TF+ LK+C L+ALD+GK +HT IKLGL+ DVFVGNSL+VMYTECG V +
Sbjct: 300 LPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVA 359
Query: 153 IFNNMSKRNLVSWNSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITYVGL 1
+F N++++++VSWNSIIVG AQ+G G +L F+QMI V P+EIT+ GL
Sbjct: 360 VFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGL 410
Score = 93.6 bits (231), Expect = 1e-17
Identities = 50/155 (32%), Positives = 77/155 (49%)
Frame = -3
Query: 474 VDNSLKVFEDNLVANVVMWTALITGYGLNSKHEEALEVFYGMIMSGTMPNQFTFASALKS 295
V+ +++FE+ V +V+ WT++I G LN K EEAL VF M+ SG P TFA L +
Sbjct: 152 VEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSA 211
Query: 294 CSELDALDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGITIFNNMSKRNLVSW 115
C+ + G +H +KLG F+ SLI Y C + IFN +N+V W
Sbjct: 212 CANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKW 271
Query: 114 NSIIVGCAQNGHGTLSLELFDQMINAEVPPDEITY 10
+++ N +L +F M P++ T+
Sbjct: 272 TALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTF 306