BLASTX nr result
ID: Coptis24_contig00015523
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00015523
(615 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281382.2| PREDICTED: zinc finger Ran-binding domain-co... 119 9e-30
emb|CBI15155.3| unnamed protein product [Vitis vinifera] 117 3e-29
ref|NP_196398.2| SNF2 and helicase domain-containing protein [Ar... 115 1e-28
ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis ... 114 6e-28
ref|XP_004138311.1| PREDICTED: LOW QUALITY PROTEIN: DNA annealin... 102 3e-26
>ref|XP_002281382.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Vitis vinifera]
Length = 1280
Score = 119 bits (297), Expect(2) = 9e-30
Identities = 56/69 (81%), Positives = 60/69 (86%)
Frame = +2
Query: 407 RPYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQGAQGKVFQDFSKGVRLEELNVLLTQ 586
RPYDI HQI+MLWPGLLG KYEFAK YC V+G+QGKVFQDFSKG+RLEELNVLL Q
Sbjct: 364 RPYDIFHQINMLWPGLLGRDKYEFAKIYCAVNFVRGSQGKVFQDFSKGIRLEELNVLLKQ 423
Query: 587 TVMIRRLKE 613
TVMIRRLKE
Sbjct: 424 TVMIRRLKE 432
Score = 37.0 bits (84), Expect(2) = 9e-30
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 325 IKAILDFAAKVTHKVLLSGTPSLSR 399
IKA+LD A KV VLLSGTPSLSR
Sbjct: 340 IKAVLDVAMKVRRIVLLSGTPSLSR 364
Score = 81.6 bits (200), Expect(3) = 4e-28
Identities = 38/49 (77%), Positives = 40/49 (81%)
Frame = +3
Query: 189 KAIAIACCFLNEGSILVVCPAILRFSWAEELERWLPILSPKDIHLDKSH 335
+AIAIA CF+NEG ILVVCPAILRFSWAEELERWLP P DIHL H
Sbjct: 236 QAIAIASCFMNEGPILVVCPAILRFSWAEELERWLPFCLPADIHLVFGH 284
Score = 47.0 bits (110), Expect(3) = 4e-28
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +1
Query: 1 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 102
L DYD VL+CLK +G+E +EIPW T NVV ++S
Sbjct: 136 LGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLS 169
Score = 42.0 bits (97), Expect(3) = 4e-28
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 104 SFVANRWIPCVPEHLPDNDVNKLLKFLPKGNCNCLL 211
SFV +W+PC PEHL D+ V++L+ LPK + LL
Sbjct: 171 SFVLEQWMPCRPEHLSDDKVDELIGMLPKRLLDALL 206
>emb|CBI15155.3| unnamed protein product [Vitis vinifera]
Length = 1201
Score = 117 bits (292), Expect(2) = 3e-29
Identities = 55/68 (80%), Positives = 59/68 (86%)
Frame = +2
Query: 410 PYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQGAQGKVFQDFSKGVRLEELNVLLTQT 589
PYDI HQI+MLWPGLLG KYEFAK YC V+G+QGKVFQDFSKG+RLEELNVLL QT
Sbjct: 367 PYDIFHQINMLWPGLLGRDKYEFAKIYCAVNFVRGSQGKVFQDFSKGIRLEELNVLLKQT 426
Query: 590 VMIRRLKE 613
VMIRRLKE
Sbjct: 427 VMIRRLKE 434
Score = 37.0 bits (84), Expect(2) = 3e-29
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 325 IKAILDFAAKVTHKVLLSGTPSLSR 399
IKA+LD A KV VLLSGTPSLSR
Sbjct: 341 IKAVLDVAMKVRRIVLLSGTPSLSR 365
Score = 75.1 bits (183), Expect(3) = 3e-26
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = +3
Query: 186 QKAIAIACCFLNEGSILVVCPAILRFSWAEELERWLPILSPKDIHLDKSH 335
Q + CC +NEG ILVVCPAILRFSWAEELERWLP P DIHL H
Sbjct: 236 QVRVTTECCDINEGPILVVCPAILRFSWAEELERWLPFCLPADIHLVFGH 285
Score = 47.0 bits (110), Expect(3) = 3e-26
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +1
Query: 1 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 102
L DYD VL+CLK +G+E +EIPW T NVV ++S
Sbjct: 136 LGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLS 169
Score = 42.0 bits (97), Expect(3) = 3e-26
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 104 SFVANRWIPCVPEHLPDNDVNKLLKFLPKGNCNCLL 211
SFV +W+PC PEHL D+ V++L+ LPK + LL
Sbjct: 171 SFVLEQWMPCRPEHLSDDKVDELIGMLPKRLLDALL 206
>ref|NP_196398.2| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
gi|332003824|gb|AED91207.1| SNF2 and helicase
domain-containing protein [Arabidopsis thaliana]
Length = 1190
Score = 115 bits (288), Expect(2) = 1e-28
Identities = 53/69 (76%), Positives = 60/69 (86%)
Frame = +2
Query: 407 RPYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQGAQGKVFQDFSKGVRLEELNVLLTQ 586
RP+DI HQI+MLWPGLLG KYEFAKTYCE +V+G QGK+FQDFSKG RL ELN+LL Q
Sbjct: 363 RPFDIFHQINMLWPGLLGKDKYEFAKTYCEVGLVRGIQGKIFQDFSKGTRLLELNILLNQ 422
Query: 587 TVMIRRLKE 613
TVMIRRLK+
Sbjct: 423 TVMIRRLKQ 431
Score = 37.0 bits (84), Expect(2) = 1e-28
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 325 IKAILDFAAKVTHKVLLSGTPSLSR 399
IK +LD A KV H +LLSGTPS+SR
Sbjct: 339 IKTVLDVAEKVKHIILLSGTPSVSR 363
Score = 78.6 bits (192), Expect(3) = 6e-25
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +3
Query: 189 KAIAIACCFLNEGSILVVCPAILRFSWAEELERWLPILSPKDIHLDKSH 335
+AIAIA CF++EGSILVVCPA+LRF+WAEELERWLP P D+HL H
Sbjct: 235 QAIAIAGCFISEGSILVVCPAVLRFTWAEELERWLPSCLPSDVHLVFGH 283
Score = 40.8 bits (94), Expect(3) = 6e-25
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +1
Query: 1 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 102
+RDY+ V CLK+ + VE + +PW+TL VV K+S
Sbjct: 135 IRDYNKVSGCLKRSKSVEVEGVPWKTLAVVEKLS 168
Score = 40.4 bits (93), Expect(3) = 6e-25
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 101 QSFVANRWIPCVPEHLPDNDVNKLLKFLPKGNCNCLL 211
QS+++ +W PC+PEH + V +L++ LP+ N LL
Sbjct: 169 QSYISGKWQPCLPEHYTEEKVEQLIETLPRKLVNALL 205
>ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297319162|gb|EFH49584.1| SNF2 domain-containing
protein [Arabidopsis lyrata subsp. lyrata]
Length = 1194
Score = 114 bits (284), Expect(2) = 6e-28
Identities = 52/69 (75%), Positives = 60/69 (86%)
Frame = +2
Query: 407 RPYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQGAQGKVFQDFSKGVRLEELNVLLTQ 586
RP+DI HQI++LWPGLLG KYEFAKTYCE +V+G QGK+FQDFSKG RL ELN+LL Q
Sbjct: 363 RPFDIFHQINILWPGLLGKEKYEFAKTYCEVGLVRGMQGKIFQDFSKGTRLLELNILLNQ 422
Query: 587 TVMIRRLKE 613
TVMIRRLK+
Sbjct: 423 TVMIRRLKQ 431
Score = 35.8 bits (81), Expect(2) = 6e-28
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 325 IKAILDFAAKVTHKVLLSGTPSLSR 399
IK +L+ A KV H VLLSGTPS+SR
Sbjct: 339 IKTVLNVAEKVKHIVLLSGTPSISR 363
Score = 80.9 bits (198), Expect(3) = 1e-27
Identities = 37/49 (75%), Positives = 41/49 (83%)
Frame = +3
Query: 189 KAIAIACCFLNEGSILVVCPAILRFSWAEELERWLPILSPKDIHLDKSH 335
+AIAIA CF++EGSILVVCPA+LRFSWAEELERWLP P DIHL H
Sbjct: 235 QAIAIAGCFISEGSILVVCPAVLRFSWAEELERWLPFCLPSDIHLVFGH 283
Score = 46.2 bits (108), Expect(3) = 1e-27
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +1
Query: 1 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 102
+RDY+MV CLK+ + VE +EIPW+TL VV K+S
Sbjct: 135 IRDYNMVSGCLKRSKSVEVEEIPWKTLAVVEKLS 168
Score = 42.0 bits (97), Expect(3) = 1e-27
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 101 QSFVANRWIPCVPEHLPDNDVNKLLKFLPKGNCNCLL 211
QSF++ +W PC+PEH + V KL++ LP+ + LL
Sbjct: 169 QSFISGKWQPCIPEHYTEEKVEKLIETLPRKLVSALL 205
>ref|XP_004138311.1| PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and
endonuclease ZRANB3-like [Cucumis sativus]
Length = 1211
Score = 78.6 bits (192), Expect(3) = 3e-26
Identities = 37/50 (74%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Frame = +3
Query: 189 KAIAIACCFLNE-GSILVVCPAILRFSWAEELERWLPILSPKDIHLDKSH 335
+AIAIACC ++E GSILVVCPA+LRFSWAEELERWLP P DIHL H
Sbjct: 234 QAIAIACCLMDEEGSILVVCPAVLRFSWAEELERWLPFCLPSDIHLVFGH 283
Score = 44.3 bits (103), Expect(3) = 3e-26
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +1
Query: 1 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 102
LRDY +LKCLK + ++ +EIPW T NVV ++S
Sbjct: 134 LRDYCSILKCLKNSKDIDVEEIPWTTFNVVERLS 167
Score = 41.2 bits (95), Expect(3) = 3e-26
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 104 SFVANRWIPCVPEHLPDNDVNKLLKFLPKGNCNCLL 211
SF + RW+PC PEHL D V +L+K LP N LL
Sbjct: 169 SFSSGRWMPCRPEHLSDEKVEELMKKLPDRLLNRLL 204
Score = 102 bits (254), Expect(2) = 7e-26
Identities = 51/68 (75%), Positives = 56/68 (82%)
Frame = +2
Query: 407 RPYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQGAQGKVFQDFSKGVRLEELNVLLTQ 586
RPYDI HQI+M PGLLG +KYEFAKTYC K V +QGK F+DFSKG+RL ELNVLL Q
Sbjct: 363 RPYDIFHQINM--PGLLGKTKYEFAKTYCAVKFVSTSQGKTFKDFSKGIRLNELNVLLKQ 420
Query: 587 TVMIRRLK 610
TVMIRRLK
Sbjct: 421 TVMIRRLK 428
Score = 40.4 bits (93), Expect(2) = 7e-26
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +1
Query: 325 IKAILDFAAKVTHKVLLSGTPSLSR 399
IKA+LD A KV H +LLSGTPSLSR
Sbjct: 339 IKAVLDLATKVQHIILLSGTPSLSR 363