BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015502
         (480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    68   7e-10

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
 Frame = -2

Query: 398 LKINTDGACRGNPGLDGWGSVFHDYMXXXXXXXXXXXXVSTNYITESVAIVESIRRAIDK 219
           +KIN DG+  G P     G VF ++              +T +  E  A + +I ++I+ 
Sbjct: 11  VKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEY 70

Query: 218 GWTNIRVESDSSAAVKAFQSGK-VHWSIKAKWNKVKQQANWINVTCT--WWESNFSADCC 48
              +I +E+DS   VKAF S + V W ++ +WN     A  I   CT    E N  AD  
Sbjct: 71  NLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADSL 130

Query: 47  AKKGVLLPNGIQQWW 3
           AK G  L     QWW
Sbjct: 131 AKNGKSLALLTSQWW 145