BLASTX nr result

ID: Coptis24_contig00015245 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015245
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321227.1| predicted protein [Populus trichocarpa] gi|2...    71   8e-11
gb|ABK96653.1| unknown [Populus trichocarpa x Populus deltoides]       71   8e-11
ref|XP_004148949.1| PREDICTED: GPN-loop GTPase 3-like [Cucumis s...    71   1e-10
ref|XP_003532017.1| PREDICTED: GPN-loop GTPase 3-like [Glycine max]    70   2e-10
gb|ACU19552.1| unknown [Glycine max]                                   70   2e-10

>ref|XP_002321227.1| predicted protein [Populus trichocarpa] gi|222862000|gb|EEE99542.1|
           predicted protein [Populus trichocarpa]
          Length = 268

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = -1

Query: 272 DLRKESSIQYVLSQIDNCIQYGEDADVKVKDFDLGDDSD 156
           DLRKESSIQY+LSQIDNCIQYGEDADVKVKDFD  D  D
Sbjct: 230 DLRKESSIQYILSQIDNCIQYGEDADVKVKDFDPEDIDD 268


>gb|ABK96653.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 268

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = -1

Query: 272 DLRKESSIQYVLSQIDNCIQYGEDADVKVKDFDLGDDSD 156
           DLRKESSIQY+LSQIDNCIQYGEDADVKVKDFD  D  D
Sbjct: 230 DLRKESSIQYILSQIDNCIQYGEDADVKVKDFDPEDIDD 268


>ref|XP_004148949.1| PREDICTED: GPN-loop GTPase 3-like [Cucumis sativus]
           gi|449524838|ref|XP_004169428.1| PREDICTED: GPN-loop
           GTPase 3-like [Cucumis sativus]
          Length = 268

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 32/39 (82%), Positives = 36/39 (92%)
 Frame = -1

Query: 272 DLRKESSIQYVLSQIDNCIQYGEDADVKVKDFDLGDDSD 156
           DLRKESSI+YVL+QIDNCIQYGEDADVK+KDFD  +D D
Sbjct: 230 DLRKESSIRYVLAQIDNCIQYGEDADVKIKDFDPDEDDD 268


>ref|XP_003532017.1| PREDICTED: GPN-loop GTPase 3-like [Glycine max]
          Length = 267

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/37 (89%), Positives = 34/37 (91%)
 Frame = -1

Query: 272 DLRKESSIQYVLSQIDNCIQYGEDADVKVKDFDLGDD 162
           DLRKE SIQYVL+QIDNCIQYGEDADVKVKDFD  DD
Sbjct: 230 DLRKEKSIQYVLAQIDNCIQYGEDADVKVKDFDPEDD 266


>gb|ACU19552.1| unknown [Glycine max]
          Length = 267

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/37 (89%), Positives = 34/37 (91%)
 Frame = -1

Query: 272 DLRKESSIQYVLSQIDNCIQYGEDADVKVKDFDLGDD 162
           DLRKE SIQYVL+QIDNCIQYGEDADVKVKDFD  DD
Sbjct: 230 DLRKEKSIQYVLAQIDNCIQYGEDADVKVKDFDPEDD 266


Top