BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015142
         (451 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28691.3| unnamed protein product [Vitis vinifera]               80   1e-13
emb|CAN77406.1| hypothetical protein VITISV_026196 [Vitis vinifera]    76   2e-12
ref|XP_002272648.1| PREDICTED: ribosome-recycling factor, chloro...    74   1e-11
sp|P82231.1|RRFC_SPIOL RecName: Full=Ribosome-recycling factor, ...    72   5e-11
gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides]       71   1e-10

>emb|CBI28691.3| unnamed protein product [Vitis vinifera]
          Length = 274

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 45/96 (46%), Positives = 55/96 (57%)
 Frame = +1

Query: 163 YKRGASKANCFPISKNAYTWSSASNYVRLTVGASQFSNKPFVTEPLVHKRRGIWKCATXX 342
           Y RG     C      A+T  SA+NYVRL  GA ++S K FV +    KR GI++CAT  
Sbjct: 26  YCRGPGYEKCHLNIGIAFTLRSAANYVRLGDGAREYSGKLFVAKRNFQKRTGIFRCATIE 85

Query: 343 XXXXXXXXXXXDAKTRMEKTIESVRENFNAVRTGRA 450
                      D K RMEKTIE+VR NFN++RTGRA
Sbjct: 86  EIEAEKSSIEKDVKERMEKTIETVRTNFNSIRTGRA 121


>emb|CAN77406.1| hypothetical protein VITISV_026196 [Vitis vinifera]
          Length = 222

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 43/96 (44%), Positives = 53/96 (55%)
 Frame = +1

Query: 163 YKRGASKANCFPISKNAYTWSSASNYVRLTVGASQFSNKPFVTEPLVHKRRGIWKCATXX 342
           Y RG     C      A+T  SA+NY RL  GA ++S K  V +    KR GI++CAT  
Sbjct: 26  YCRGPGYEKCHLNIGIAFTLRSAANYXRLGDGAREYSGKLIVAKRNFQKRTGIFRCATIE 85

Query: 343 XXXXXXXXXXXDAKTRMEKTIESVRENFNAVRTGRA 450
                      D K RMEKTIE+VR NFN++RTGRA
Sbjct: 86  EIEAEKSSIEKDVKERMEKTIETVRTNFNSIRTGRA 121


>ref|XP_002272648.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Vitis
           vinifera]
          Length = 280

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 45/104 (43%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
 Frame = +1

Query: 163 YKRGASKANCFPISKNAYTWSSASNYVRLTVGASQFSNKPFVTEPLVHKRR--------G 318
           Y RG     C      A+T  SA+NYVRL  GA ++S K FV +    KR+        G
Sbjct: 24  YCRGPGYEKCHLNIGIAFTLRSAANYVRLGDGAREYSGKLFVAKRNFQKRQVESYGYKTG 83

Query: 319 IWKCATXXXXXXXXXXXXXDAKTRMEKTIESVRENFNAVRTGRA 450
           I++CAT             D K RMEKTIE+VR NFN++RTGRA
Sbjct: 84  IFRCATIEEIEAEKSSIEKDVKERMEKTIETVRTNFNSIRTGRA 127


>sp|P82231.1|RRFC_SPIOL RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
           AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName:
           Full=Ribosome-releasing factor, chloroplastic; Flags:
           Precursor gi|4689034|emb|CAB41419.1| chloroplast
           ribosome recycling factor protein [Spinacia oleracea]
          Length = 271

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 45/117 (38%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
 Frame = +1

Query: 112 AISLSSAGSLYKPIQDSYK----RGASKANCFPISKNAYTWSSASNYVRLTVGASQFSNK 279
           A SLSSA S     +        +G S   C     N   W S++NYVR+  G  +FS K
Sbjct: 3   ASSLSSATSYLHSFRRRNSCVSLQGVSDMECNIARTNVSVWRSSANYVRMDCGVKKFSGK 62

Query: 280 PFVTEPLVHKRRGIWKCATXXXXXXXXXXXXXDAKTRMEKTIESVRENFNAVRTGRA 450
             V + L   R G ++CAT             + K RMEKTIE++R NFN+VRT RA
Sbjct: 63  AVVVKQL-QNRAGTFRCATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRA 118


>gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 286

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
 Frame = +1

Query: 160 SYKRGASKANCFPISKNAYT---WSSASNYVRLTVGASQFSNKPFVTEPLVHKRRGIWKC 330
           S+ RG  +A     S  A +   WSS++NY  L  G+S+ S KP   + L+  RRG+ + 
Sbjct: 34  SFHRGPHRAKVGYNSIGAASVSLWSSSANYSSLRNGSSKLSGKPVAVKRLLQNRRGVVRN 93

Query: 331 ATXXXXXXXXXXXXXDAKTRMEKTIESVRENFNAVRTGRA 450
           AT             DAK RMEKTI+++R NFN+VRTGRA
Sbjct: 94  ATIEEIEAEKSLIEDDAKGRMEKTIDTMRTNFNSVRTGRA 133