BLASTX nr result

ID: Coptis24_contig00015131 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015131
         (877 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331080.1| predicted protein [Populus trichocarpa] gi|2...    93   9e-17
ref|XP_002527837.1| conserved hypothetical protein [Ricinus comm...    80   6e-13
ref|NP_001237847.1| uncharacterized protein LOC100527815 [Glycin...    63   1e-07
ref|NP_680736.1| uncharacterized protein [Arabidopsis thaliana] ...    58   3e-06

>ref|XP_002331080.1| predicted protein [Populus trichocarpa] gi|222872808|gb|EEF09939.1|
           predicted protein [Populus trichocarpa]
          Length = 213

 Score = 92.8 bits (229), Expect = 9e-17
 Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
 Frame = -3

Query: 668 HCCSCSF----AQPSAPPLPSWLDFEQSHIANTAFGMFGDSSLGQPISEDHIVHEEIVSE 501
           HCC CS+     QPSAPPLP WL+ E ++ A +A G+     L  P S   +  +EIV E
Sbjct: 37  HCC-CSYPTAPTQPSAPPLPPWLEPELTYEAVSAPGLLSLPELAHP-SHIQVPSQEIVME 94

Query: 500 ITPLCPSFPISSTPSYQQYMVTSPVYGVPVAPATQTEKFGGVFGCAVSVGANLI 339
            TP+ P+ P     SYQQY+V +PVYGVPV    + EK  G FGC V+  ANLI
Sbjct: 95  TTPIYPTLP-----SYQQYLVPNPVYGVPVEQKPRREKSTGFFGCVVTFCANLI 143


>ref|XP_002527837.1| conserved hypothetical protein [Ricinus communis]
           gi|223532761|gb|EEF34540.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 161

 Score = 80.1 bits (196), Expect = 6e-13
 Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
 Frame = -3

Query: 668 HCCSCSFA---QPSAPPLPSWLDFEQSH--IANTAFGMFGDSSLGQPISEDHIVHEEIV- 507
           HCC CS++   QPSAPPLP WL+  Q+H  I++T      +       S+     +EIV 
Sbjct: 35  HCC-CSYSTPVQPSAPPLPPWLESAQTHEAISSTEVQQLPEEGYQ---SQFQFPSQEIVV 90

Query: 506 -SEITPLCPSFPISSTP-SYQQYMVTSPVYGVPVAPAT-QTEKFGGVFGCAVSVGANLI 339
            ++   + P+ P + TP +YQQY V +PVYGVPV   T + E+  G FGC V  GANLI
Sbjct: 91  ETDTNAIYPTLPNTDTPLTYQQYAVPNPVYGVPVVEQTPRRERSAGFFGCFVKFGANLI 149


>ref|NP_001237847.1| uncharacterized protein LOC100527815 [Glycine max]
           gi|255633270|gb|ACU16991.1| unknown [Glycine max]
          Length = 144

 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 49/118 (41%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
 Frame = -3

Query: 668 HCCSC---SFAQPSAPPLPS--WLDFEQSHIANTAFGMFGDSSLGQPISEDHIVHEEIVS 504
           +CCSC   S  QPSAPPLPS   LDFE S+     +G F  +   +P  E          
Sbjct: 32  YCCSCYCSSSIQPSAPPLPSSSCLDFEYSN-----YGTFLPTPEPEPEPEPQ-------- 78

Query: 503 EITPLCPSFPISSTPSYQQYMVT--SPVYG--VPVAPATQTEKFGGVFGCAVSVGANL 342
                 P    S   SYQQYMV+   PVYG  VPV  A++TE+  G FGC  S G+ L
Sbjct: 79  ------PQEIASLNSSYQQYMVSVSEPVYGIPVPVIHASRTERSAGQFGCLFSFGSYL 130


>ref|NP_680736.1| uncharacterized protein [Arabidopsis thaliana]
           gi|50253462|gb|AAT71933.1| At4g24265 [Arabidopsis
           thaliana] gi|51972102|gb|AAU15155.1| At4g24265
           [Arabidopsis thaliana] gi|332659480|gb|AEE84880.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 140

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
 Frame = -3

Query: 668 HCCSCSFA--------QPSAPPLPSWLDFEQSHIANTAFGMFGDSSLGQPISEDHIVH-- 519
           H CSC ++        +P+APPLP W D  +S        +    +   P +  H+ H  
Sbjct: 23  HHCSCEYSSTAVAVLVEPTAPPLPYWFDETRS--------LCPPETSSFPWTTHHLPHQQ 74

Query: 518 EEIVSEITPLCPSFP-ISSTPSYQQYMVTSPVYGVPVAPATQTEKFGGVFGCAVSVGANL 342
           EE + E TPL      +    SYQQYMV +P   V        ++  G+FGC + + ++L
Sbjct: 75  EETIVEATPLLSQVSDLRIYQSYQQYMVPNPTSNVHFVEPATAKRSVGIFGCVIELSSSL 134

Query: 341 I 339
           +
Sbjct: 135 V 135


Top