BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015029
         (257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528839.1| pentatricopeptide repeat-containing protein,...   115   3e-24
ref|XP_002883423.1| pentatricopeptide repeat-containing protein ...   114   1e-23
ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat...   113   2e-23
emb|CBI31172.3| unnamed protein product [Vitis vinifera]              113   2e-23
emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]   113   2e-23

>ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531751|gb|EEF33573.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 393

 Score =  115 bits (289), Expect = 3e-24
 Identities = 54/71 (76%), Positives = 65/71 (91%)
 Frame = -3

Query: 213 MESVKKVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTLSSVLPI 34
           ++SV+KVF  MP+RD+VSWNT++AGNA NGM+EEALVMVREMG  +LKPD+FTLSSVLPI
Sbjct: 137 VDSVRKVFEMMPKRDLVSWNTVIAGNAHNGMHEEALVMVREMGNVNLKPDSFTLSSVLPI 196

Query: 33  FAEYVDVSKGK 1
           FAEYV+V KGK
Sbjct: 197 FAEYVNVDKGK 207



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = -3

Query: 231 FSNVVSMESVKKVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTL 52
           ++    +E   +VF  +P+RD +SWN+I+AG  QN +++E L   R+M  A++KP   + 
Sbjct: 232 YAKCTRVEDSLRVFSLLPRRDDISWNSIIAGCVQNSLFDEGLRFFRQMLKANVKPRQVSF 291

Query: 51  SSVLPIFAEYVDVSKGK 1
           SS+LP  A    ++ G+
Sbjct: 292 SSILPACAHLTTLNLGR 308


>ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329263|gb|EFH59682.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 679

 Score =  114 bits (284), Expect = 1e-23
 Identities = 53/77 (68%), Positives = 69/77 (89%)
 Frame = -3

Query: 231 FSNVVSMESVKKVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTL 52
           +S ++ ++SV+KVF  MP++D+VS+NT++AG AQ+GMYE+AL MVREMG +DLKPDAFTL
Sbjct: 150 YSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTL 209

Query: 51  SSVLPIFAEYVDVSKGK 1
           SSVLPIF+EYVDV KGK
Sbjct: 210 SSVLPIFSEYVDVLKGK 226



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)
 Frame = -3

Query: 231 FSNVVSMESVKKVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTL 52
           ++    +E  ++VF  + +RD +SWN++VAG  QNG Y EAL + R+M  A ++P A   
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAF 310

Query: 51  SSVLPIFAEYVDVSKGK 1
           SSV+P  A    +  GK
Sbjct: 311 SSVIPACAHLATLHLGK 327


>ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  113 bits (282), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 65/69 (94%)
 Frame = -3

Query: 207 SVKKVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFA 28
           S++KVF  MP+RDIVSWNT+++GNAQNGM+E+AL+MVREMG ADL+PD+FTLSSVLPIFA
Sbjct: 188 SLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA 247

Query: 27  EYVDVSKGK 1
           EYV++ KGK
Sbjct: 248 EYVNLLKGK 256



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/66 (40%), Positives = 43/66 (65%)
 Frame = -3

Query: 198 KVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFAEYV 19
           +VF  +PQ D +SWN+I+AG  QNGM++E L   ++M +A +KP+  + SS++P  A   
Sbjct: 292 RVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLT 351

Query: 18  DVSKGK 1
            +  GK
Sbjct: 352 TLHLGK 357


>emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  113 bits (282), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 65/69 (94%)
 Frame = -3

Query: 207 SVKKVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFA 28
           S++KVF  MP+RDIVSWNT+++GNAQNGM+E+AL+MVREMG ADL+PD+FTLSSVLPIFA
Sbjct: 188 SLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA 247

Query: 27  EYVDVSKGK 1
           EYV++ KGK
Sbjct: 248 EYVNLLKGK 256



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/66 (40%), Positives = 43/66 (65%)
 Frame = -3

Query: 198 KVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFAEYV 19
           +VF  +PQ D +SWN+I+AG  QNGM++E L   ++M +A +KP+  + SS++P  A   
Sbjct: 292 RVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLT 351

Query: 18  DVSKGK 1
            +  GK
Sbjct: 352 TLHLGK 357


>emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  113 bits (282), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 65/69 (94%)
 Frame = -3

Query: 207 SVKKVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFA 28
           S++KVF  MP+RDIVSWNT+++GNAQNGM+E+AL+MVREMG ADL+PD+FTLSSVLPIFA
Sbjct: 148 SLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA 207

Query: 27  EYVDVSKGK 1
           EYV++ KGK
Sbjct: 208 EYVNLLKGK 216



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/66 (40%), Positives = 43/66 (65%)
 Frame = -3

Query: 198 KVFGTMPQRDIVSWNTIVAGNAQNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFAEYV 19
           +VF  +PQ D +SWN+I+AG  QNGM++E L   ++M +A +KP+  + SS++P  A   
Sbjct: 252 RVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLT 311

Query: 18  DVSKGK 1
            +  GK
Sbjct: 312 TLHLGK 317