BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014985
         (1039 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002458168.1| hypothetical protein SORBIDRAFT_03g028130 [S...    93   1e-19
ref|XP_002515835.1| pentatricopeptide repeat-containing protein,...    65   2e-19
tpg|DAA58542.1| TPA: hypothetical protein ZEAMMB73_802520 [Zea m...    94   6e-19
emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]    60   2e-18
ref|XP_003588473.1| Pentatricopeptide repeat-containing protein ...    67   4e-18

>ref|XP_002458168.1| hypothetical protein SORBIDRAFT_03g028130 [Sorghum bicolor]
           gi|241930143|gb|EES03288.1| hypothetical protein
           SORBIDRAFT_03g028130 [Sorghum bicolor]
          Length = 694

 Score = 93.2 bits (230), Expect(3) = 1e-19
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
 Frame = +1

Query: 379 LFERIPQRN-EVTRNSMVSGYAHNGYWIKALEALEIMGTSGIEVKVSSWNSIMVGCVQNG 555
           LF+RIP+    V  N+M+  YA +G+  +A E +  M  SGI +  S+WN+++ GCV+ G
Sbjct: 108 LFDRIPKSTCPVPWNTMILRYAQDGFLDEAFELMVAMEESGIPIGASTWNAVIAGCVRAG 167

Query: 556 DMVLAFETQRKMLVLGSCLNPDSATFNTFLSVIPRDVSLIWLKEIHGFAIKQKGIIDVDS 735
           +  LA E   KM+ +G  + P+ ATFNT L VI     +  L+E+H F ++   ++ +  
Sbjct: 168 NGELAIELLGKMVSIGGVV-PNVATFNTVLHVISVLRGVDVLRELHAFVLRNAEVVGLGP 226

Query: 736 IDDDKLRAYIVPGYAFHHCMSYTCRLFEGISLKT 837
           +D D+L+  +  GY     + Y  R+F  + + T
Sbjct: 227 VDLDRLQESLAAGYMCSSFVQYAGRVFRDVRITT 260



 Score = 25.4 bits (54), Expect(3) = 1e-19
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 860 MMSGFIEYKQTNEAFRVFRDI 922
           M+SGF++  Q N+A  VFR++
Sbjct: 267 MISGFLDTGQRNQALGVFREM 287



 Score = 25.0 bits (53), Expect(3) = 1e-19
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 939  GGEFKVVSYVP*TLLLPKCSASSLIGLEIHGHA 1037
            G E + +  V  TL+LP+ + ++  GLEIH +A
Sbjct: 292  GYEARHLPSVSLTLVLPEVNLATKRGLEIHAYA 324


>ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544990|gb|EEF46504.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 655

 Score = 65.5 bits (158), Expect(2) = 2e-19
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
 Frame = +3

Query: 87  WNTMI*AYVNNSSFIDGVELFLEMWGLG---FLPNEFTYLFVFKCCYVLGLVELGRMIHG 257
           WN+MI  Y+ +     G+ELF  MW +G    +P+  + + V   C  +G    G+ +HG
Sbjct: 211 WNSMIAVYLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWLCGKQVHG 270

Query: 258 AMIVHGYCEDVFAGSALLDVYVKCG 332
             I +G  EDVF  ++L+D+Y KCG
Sbjct: 271 FAIRYGLFEDVFVANSLVDMYAKCG 295



 Score = 57.0 bits (136), Expect(2) = 2e-19
 Identities = 37/111 (33%), Positives = 60/111 (54%)
 Frame = +1

Query: 376 KLFERIPQRNEVTRNSMVSGYAHNGYWIKALEALEIMGTSGIEVKVSSWNSIMVGCVQNG 555
           K+F+R+  ++ V+ N+MV+GY+  G +  AL   E M    I++ V SW++++ G  Q G
Sbjct: 302 KVFDRMQHKDVVSWNAMVTGYSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQRG 361

Query: 556 DMVLAFETQRKMLVLGSCLNPDSATFNTFLSVIPRDVSLIWLKEIHGFAIK 708
               A    R+M V G  L P+  T  + LS      +L+  KE H ++IK
Sbjct: 362 LGYEALNVFRQMQVCG--LRPNEVTLVSLLSGCASVGALLHGKETHCYSIK 410


>tpg|DAA58542.1| TPA: hypothetical protein ZEAMMB73_802520 [Zea mays]
          Length = 696

 Score = 93.6 bits (231), Expect(3) = 6e-19
 Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
 Frame = +1

Query: 379 LFERIPQRN-EVTRNSMVSGYAHNGYWIKALEALEIMGTSGIEVKVSSWNSIMVGCVQNG 555
           LF+RIP+    V  N+M+  YA +G+  +A + +  M  SGI +  S+WN+++ GCV+  
Sbjct: 112 LFDRIPKSTYPVPWNTMILRYAQDGFLDEAFDLMVAMEESGIPIGASTWNAVIAGCVRAE 171

Query: 556 DMVLAFETQRKMLVLGSCLNPDSATFNTFLSVIPRDVSLIWLKEIHGFAIKQKGIIDVDS 735
           +  LA E   KM+ +G  + P  ATFNT L VI     +  L+E+H F ++   ++ +  
Sbjct: 172 NGELAIELLGKMVSVGGVV-PSVATFNTVLHVISALRGVNVLRELHAFVLRNAEVVGLGP 230

Query: 736 IDDDKLRAYIVPGYAFHHCMSYTCRLFEGISLKT 837
           +D D+L+  +  GY    C+ Y  R+F  + + T
Sbjct: 231 VDLDRLQESLAAGYMCSSCVQYAGRVFRDVRIST 264



 Score = 24.3 bits (51), Expect(3) = 6e-19
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 975  TLLLPKCSASSLIGLEIHGHA 1037
            TL+LP+ + ++  GLEIH +A
Sbjct: 308  TLVLPEVNLATKRGLEIHAYA 328



 Score = 23.1 bits (48), Expect(3) = 6e-19
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 860 MMSGFIEYKQTNEAFRVFRDI 922
           M+SGF++  Q N+A  V R++
Sbjct: 271 MISGFLDTGQRNQALGVLREM 291


>emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score = 60.5 bits (145), Expect(2) = 2e-18
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = +3

Query: 87  WNTMI*AYVNNSSFIDGVELFLEMW-GLGFLPNEFTYLFVFKCCYVLGLVELGRMIHGAM 263
           WN+++ AY+     I  +++F  M   LG  P+  + + V   C  +G    G+ +HG  
Sbjct: 217 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 276

Query: 264 IVHGYCEDVFAGSALLDVYVKCGCFDE 344
           +  G  EDVF G+A++D+Y KCG  +E
Sbjct: 277 LRSGLFEDVFVGNAVVDMYAKCGMMEE 303



 Score = 58.5 bits (140), Expect(2) = 2e-18
 Identities = 41/124 (33%), Positives = 66/124 (53%)
 Frame = +1

Query: 376 KLFERIPQRNEVTRNSMVSGYAHNGYWIKALEALEIMGTSGIEVKVSSWNSIMVGCVQNG 555
           K+FER+  ++ V+ N+MV+GY+  G +  AL   E +    IE+ V +W++++ G  Q G
Sbjct: 306 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRG 365

Query: 556 DMVLAFETQRKMLVLGSCLNPDSATFNTFLSVIPRDVSLIWLKEIHGFAIKQKGIIDVDS 735
               A +  R+ML+ GS   P+  T  + LS      +L+  KE H  AIK    +D + 
Sbjct: 366 LGFEALDVFRQMLLCGS--EPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDEND 423

Query: 736 IDDD 747
             DD
Sbjct: 424 PGDD 427



 Score = 57.4 bits (137), Expect = 6e-06
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
 Frame = +3

Query: 81  FFWNTMI*AYVNNSSFIDGVELFLEMWGLGFLPNEFTYLFVFKCCYVLGLVELGRMIHGA 260
           F+WN +I   V+     D ++L+  M  LG+ P+ +T+ FV K C  +     G  +H  
Sbjct: 111 FWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAV 170

Query: 261 MIVHGYCEDVFAGSALLDVYVKCGC-------FDELYPCGCFDV 371
           +   G+  +VF G+ L+ +Y +CG        FDE+   G  D+
Sbjct: 171 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDL 214


>ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477521|gb|AES58724.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 827

 Score = 66.6 bits (161), Expect(2) = 4e-18
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
 Frame = +3

Query: 87  WNTMI*AYVNNSSFIDGVELFLEMW--GLGFLPNEFTYLFVFKCCYVLGLVELGRMIHGA 260
           W  ++  ++N   F  G  LF E    GLG   + F +  V   C  LG +ELGR +HG 
Sbjct: 100 WTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGM 159

Query: 261 MIVHGYCEDVFAGSALLDVYVKCGCFDE 344
           ++ HG+  +V+ G+AL+D+Y KCG  DE
Sbjct: 160 VLKHGFVTNVYVGNALIDMYGKCGSLDE 187



 Score = 51.6 bits (122), Expect(2) = 4e-18
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
 Frame = +1

Query: 376 KLFERIPQRNEVTRNSMVSGYAHNGYWIKALEALEIMGTSGIEVKVSSWNSIMVGCVQNG 555
           K+ E + Q++ V+ NS+++    NG   +AL+ LE M  S +E  V +W++++ G   N 
Sbjct: 190 KVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNA 249

Query: 556 DMVLAFETQRKMLVLGSCLNPDSATFNTFLSVIPRDVSLIWL---KEIHGFAIKQK 714
             V + E   +M+  G+ + PD+    T  SV+P    + WL   KE+HG+ ++ +
Sbjct: 250 YDVESVELFARMV--GAGVAPDA---RTLASVLPACSRMKWLFVGKELHGYIVRHE 300



 Score = 60.5 bits (145), Expect(2) = 6e-16
 Identities = 36/109 (33%), Positives = 58/109 (53%)
 Frame = +1

Query: 382 FERIPQRNEVTRNSMVSGYAHNGYWIKALEALEIMGTSGIEVKVSSWNSIMVGCVQNGDM 561
           F+ I +R+  T N+++SGYA      K  E +E M + G E  V +WNSI+ G V+N   
Sbjct: 464 FDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQY 523

Query: 562 VLAFETQRKMLVLGSCLNPDSATFNTFLSVIPRDVSLIWLKEIHGFAIK 708
            LA +   +M V  S L PD  T    L+   +  ++   K++H ++I+
Sbjct: 524 DLAMQLFNEMQV--SSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIR 570



 Score = 50.4 bits (119), Expect(2) = 6e-16
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
 Frame = +3

Query: 87  WNTMI*AYVNNSSFIDGVELFLEMWGLGFLPNEFTYLFVFKCCYVLGLVELGRMIHGAMI 266
           WN MI  +V+N  F D + LF ++   G  P+ FT   +      +  +  G+ IH   I
Sbjct: 374 WNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAI 433

Query: 267 VHGYCEDVFAGSALLDVYVKCG-------CFDEL 347
           V G   + F G AL+++Y KC         FDE+
Sbjct: 434 VKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEI 467



 Score = 50.4 bits (119), Expect(2) = 3e-12
 Identities = 24/82 (29%), Positives = 44/82 (53%)
 Frame = +3

Query: 87  WNTMI*AYVNNSSFIDGVELFLEMWGLGFLPNEFTYLFVFKCCYVLGLVELGRMIHGAMI 266
           W+ +I  + +N+  ++ VELF  M G G  P+  T   V   C  +  + +G+ +HG ++
Sbjct: 238 WSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIV 297

Query: 267 VHGYCEDVFAGSALLDVYVKCG 332
            H    + F  +AL+ +Y +CG
Sbjct: 298 RHELFSNGFVANALVGMYRRCG 319



 Score = 48.1 bits (113), Expect(2) = 3e-12
 Identities = 35/110 (31%), Positives = 51/110 (46%)
 Frame = +1

Query: 376 KLFERIPQRNEVTRNSMVSGYAHNGYWIKALEALEIMGTSGIEVKVSSWNSIMVGCVQNG 555
           K+F +  ++   + N+M+ GY  NG   KA E    M   G+E    SWN ++ G V N 
Sbjct: 326 KIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNF 385

Query: 556 DMVLAFETQRKMLVLGSCLNPDSATFNTFLSVIPRDVSLIWLKEIHGFAI 705
               A    R +L+ G  + PDS T  + L+       +   KEIH  AI
Sbjct: 386 MFDDALMLFRDLLMEG--IEPDSFTLGSILTGFADMTCIRQGKEIHSIAI 433