BLASTX nr result
ID: Coptis24_contig00014897
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00014897
(1984 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002320388.1| predicted protein [Populus trichocarpa] gi|2... 248 1e-88
ref|XP_002302831.1| predicted protein [Populus trichocarpa] gi|2... 244 4e-88
ref|XP_002524809.1| elongation factor tu, putative [Ricinus comm... 235 4e-87
ref|XP_002892157.1| predicted protein [Arabidopsis lyrata subsp.... 230 6e-86
ref|XP_002872804.1| hypothetical protein ARALYDRAFT_490266 [Arab... 232 2e-85
>ref|XP_002320388.1| predicted protein [Populus trichocarpa] gi|222861161|gb|EEE98703.1|
predicted protein [Populus trichocarpa]
Length = 450
Score = 248 bits (633), Expect(2) = 1e-88
Identities = 128/157 (81%), Positives = 133/157 (84%), Gaps = 6/157 (3%)
Frame = +2
Query: 44 MASFIIRNPNSKRLLSFSP---CCRRGPISTHVSFFES---GNDQVSEFGSLWRSMATFT 205
MAS ++RNPNSKRLL FS CC RG STH S ES ND+ S WRSMATFT
Sbjct: 1 MASVVLRNPNSKRLLPFSSQIHCCCRGSASTHSSISESLSSSNDRTSS-SPWWRSMATFT 59
Query: 206 RTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATAH 385
R KPHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKAIAFDEIDKAPEEK+RGITIATAH
Sbjct: 60 RNKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 119
Query: 386 VEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 496
VEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGIL
Sbjct: 120 VEYETTKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 156
Score = 107 bits (266), Expect(2) = 1e-88
Identities = 53/73 (72%), Positives = 56/73 (76%)
Frame = +1
Query: 553 VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFP 732
VVSA DGPMPQTKEHILLARQVGVPSLVCFLNKVD V DP +FYKFP
Sbjct: 157 VVSAADGPMPQTKEHILLARQVGVPSLVCFLNKVDVVSDPELIELVEMEVRELLNFYKFP 216
Query: 733 GDEIPIIRGSALS 771
GDEIPI++GSALS
Sbjct: 217 GDEIPIVQGSALS 229
Score = 138 bits (347), Expect(3) = 5e-77
Identities = 67/82 (81%), Positives = 75/82 (91%)
Frame = +3
Query: 939 DVFSIQGRGTVVTGRVEQGTIKTGEDVEIQGLMQGGPLKSTVTGVEMFKKILDHGEAGDN 1118
DVFSIQGRGTV TGRVEQGTIK GE+VEI GL + GP K+TVTGVEMFKK+LD G+AGDN
Sbjct: 271 DVFSIQGRGTVATGRVEQGTIKVGEEVEILGLSKDGPKKTTVTGVEMFKKLLDQGQAGDN 330
Query: 1119 VGLLLRGLKRDDVQRGQVVSKP 1184
VGLLLRGLKR+DVQRGQV++KP
Sbjct: 331 VGLLLRGLKREDVQRGQVIAKP 352
Score = 109 bits (272), Expect(3) = 5e-77
Identities = 52/55 (94%), Positives = 53/55 (96%)
Frame = +1
Query: 1264 GTIKTFKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV 1428
GT+KT KRFEAEIY LTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV
Sbjct: 353 GTVKTSKRFEAEIYSLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV 407
Score = 90.5 bits (223), Expect(3) = 5e-77
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 1509 PENVKMVMPGDNVTAIFELISSVPLEAGQRFALREGGRTVGAGVVSKVI 1655
PENVKMVMPGDNVTA+FELI VPLE GQRFALREGGRTVGAGVVSKV+
Sbjct: 401 PENVKMVMPGDNVTAVFELILPVPLETGQRFALREGGRTVGAGVVSKVL 449
>ref|XP_002302831.1| predicted protein [Populus trichocarpa] gi|222844557|gb|EEE82104.1|
predicted protein [Populus trichocarpa]
Length = 447
Score = 244 bits (622), Expect(2) = 4e-88
Identities = 125/154 (81%), Positives = 130/154 (84%), Gaps = 3/154 (1%)
Frame = +2
Query: 44 MASFIIRNPNSKRLLSFSP---CCRRGPISTHVSFFESGNDQVSEFGSLWRSMATFTRTK 214
MAS +RNPNSKRLL FS CC RG S+ S ND+ S WRSMATFTRTK
Sbjct: 1 MASLALRNPNSKRLLPFSSQFYCCCRGSPSSLTESLLSSNDRTSS-SPWWRSMATFTRTK 59
Query: 215 PHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATAHVEY 394
PHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKAIAFDEIDKAPEEK+RGITIATAHVEY
Sbjct: 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY 119
Query: 395 ETVKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 496
ET KRHYAHVDCPGHADYVKNMITGAAQMDGGIL
Sbjct: 120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 153
Score = 109 bits (273), Expect(2) = 4e-88
Identities = 55/73 (75%), Positives = 56/73 (76%)
Frame = +1
Query: 553 VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFP 732
VVSA DGPMPQTKEHILLARQVGVPSLVCFLNKVD V DP SFYKFP
Sbjct: 154 VVSAADGPMPQTKEHILLARQVGVPSLVCFLNKVDVVSDPELIELVEMEVRELLSFYKFP 213
Query: 733 GDEIPIIRGSALS 771
GDEIPI+RGSALS
Sbjct: 214 GDEIPIVRGSALS 226
Score = 136 bits (343), Expect(3) = 4e-77
Identities = 66/82 (80%), Positives = 75/82 (91%)
Frame = +3
Query: 939 DVFSIQGRGTVVTGRVEQGTIKTGEDVEIQGLMQGGPLKSTVTGVEMFKKILDHGEAGDN 1118
DVFSIQGRGTV TGRVEQGTIK GE+VEI GL + GP ++TVTGVEMFKK+LD G+AGDN
Sbjct: 268 DVFSIQGRGTVATGRVEQGTIKVGEEVEILGLSKEGPKRTTVTGVEMFKKLLDQGQAGDN 327
Query: 1119 VGLLLRGLKRDDVQRGQVVSKP 1184
VGLLLRGLKR+DVQRGQV++KP
Sbjct: 328 VGLLLRGLKREDVQRGQVIAKP 349
Score = 111 bits (277), Expect(3) = 4e-77
Identities = 52/55 (94%), Positives = 54/55 (98%)
Frame = +1
Query: 1264 GTIKTFKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV 1428
GT+KT+KRFEAEIY LTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV
Sbjct: 350 GTVKTYKRFEAEIYSLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV 404
Score = 90.5 bits (223), Expect(3) = 4e-77
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = +3
Query: 1509 PENVKMVMPGDNVTAIFELISSVPLEAGQRFALREGGRTVGAGVVSKVI 1655
PENVKMVMPGDNVTAIFELI VPLE GQRFALREGGRTVGAGVVSKV+
Sbjct: 398 PENVKMVMPGDNVTAIFELILPVPLEKGQRFALREGGRTVGAGVVSKVL 446
>ref|XP_002524809.1| elongation factor tu, putative [Ricinus communis]
gi|223535993|gb|EEF37652.1| elongation factor tu,
putative [Ricinus communis]
Length = 449
Score = 235 bits (599), Expect(2) = 4e-87
Identities = 118/155 (76%), Positives = 127/155 (81%), Gaps = 4/155 (2%)
Frame = +2
Query: 44 MASFIIRNPNSKRLLSFSP----CCRRGPISTHVSFFESGNDQVSEFGSLWRSMATFTRT 211
MA+ +RNPNSKRLL FS CR G + + F ++ WRSMATFTRT
Sbjct: 1 MAAAALRNPNSKRLLPFSSQIYWSCRGGSAACASTHFSLSSNDSFNHNPWWRSMATFTRT 60
Query: 212 KPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATAHVE 391
KPHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKA+AFDEIDKAPEEK+RGITIATAHVE
Sbjct: 61 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKKRGITIATAHVE 120
Query: 392 YETVKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 496
YET KRHYAHVDCPGHADYVKNMITGAAQMDGGIL
Sbjct: 121 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 155
Score = 115 bits (287), Expect(2) = 4e-87
Identities = 58/73 (79%), Positives = 58/73 (79%)
Frame = +1
Query: 553 VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFP 732
VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNK DAVDDP SFYKFP
Sbjct: 156 VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKCDAVDDPELLELVEMELRELLSFYKFP 215
Query: 733 GDEIPIIRGSALS 771
GDEIPIIRGSALS
Sbjct: 216 GDEIPIIRGSALS 228
Score = 145 bits (366), Expect(3) = 4e-80
Identities = 71/82 (86%), Positives = 77/82 (93%)
Frame = +3
Query: 939 DVFSIQGRGTVVTGRVEQGTIKTGEDVEIQGLMQGGPLKSTVTGVEMFKKILDHGEAGDN 1118
DVFSIQGRGTV TGRVEQGTIK GE+VEI GLMQG PLK+TVTGVEMFKKILD G+AGDN
Sbjct: 270 DVFSIQGRGTVATGRVEQGTIKVGEEVEILGLMQGAPLKTTVTGVEMFKKILDQGQAGDN 329
Query: 1119 VGLLLRGLKRDDVQRGQVVSKP 1184
VGLLLRGLKR+DVQRGQV++KP
Sbjct: 330 VGLLLRGLKREDVQRGQVIAKP 351
Score = 110 bits (274), Expect(3) = 4e-80
Identities = 50/55 (90%), Positives = 55/55 (100%)
Frame = +1
Query: 1264 GTIKTFKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV 1428
G++KT+K+FEAEIYVLTKDEGGRHTAFFSNYRPQFY+RTADITGKVELPENVKMV
Sbjct: 352 GSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMV 406
Score = 92.8 bits (229), Expect(3) = 4e-80
Identities = 47/50 (94%), Positives = 47/50 (94%)
Frame = +3
Query: 1509 PENVKMVMPGDNVTAIFELISSVPLEAGQRFALREGGRTVGAGVVSKVIS 1658
PENVKMVMPGDNVTA FELI VPLEAGQRFALREGGRTVGAGVVSKVIS
Sbjct: 400 PENVKMVMPGDNVTATFELILPVPLEAGQRFALREGGRTVGAGVVSKVIS 449
>ref|XP_002892157.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337999|gb|EFH68416.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 449
Score = 230 bits (587), Expect(2) = 6e-86
Identities = 120/155 (77%), Positives = 128/155 (82%), Gaps = 4/155 (2%)
Frame = +2
Query: 44 MASFIIRNPNSKRLLSFSP--CCRRGPISTHVSFFESGNDQVSEF--GSLWRSMATFTRT 211
MAS +RN SKRL+ FS R G +S F G+D+ S S WRSMATFTRT
Sbjct: 1 MASVALRNSTSKRLVPFSSQIYLRCGGSIPSISHFVGGDDRCSPSYATSWWRSMATFTRT 60
Query: 212 KPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIATAHVE 391
KPHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKA+AFDEIDKAPEEK+RGITIATAHVE
Sbjct: 61 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKKRGITIATAHVE 120
Query: 392 YETVKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 496
YET KRHYAHVDCPGHADYVKNMITGAAQMDGGIL
Sbjct: 121 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 155
Score = 115 bits (289), Expect(2) = 6e-86
Identities = 58/73 (79%), Positives = 59/73 (80%)
Frame = +1
Query: 553 VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFP 732
VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDP SFYKFP
Sbjct: 156 VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFP 215
Query: 733 GDEIPIIRGSALS 771
GD+IPIIRGSALS
Sbjct: 216 GDDIPIIRGSALS 228
Score = 138 bits (347), Expect(3) = 1e-76
Identities = 67/82 (81%), Positives = 75/82 (91%)
Frame = +3
Query: 939 DVFSIQGRGTVVTGRVEQGTIKTGEDVEIQGLMQGGPLKSTVTGVEMFKKILDHGEAGDN 1118
DVFSIQGRGTV TGR+EQGTIK GE+VEI GL G PLKSTVTGVEMFKKILD+G+AGDN
Sbjct: 270 DVFSIQGRGTVATGRIEQGTIKVGEEVEILGLSTGLPLKSTVTGVEMFKKILDNGQAGDN 329
Query: 1119 VGLLLRGLKRDDVQRGQVVSKP 1184
VGLLLRGLKR+D+QRG V++KP
Sbjct: 330 VGLLLRGLKREDIQRGMVIAKP 351
Score = 107 bits (266), Expect(3) = 1e-76
Identities = 50/55 (90%), Positives = 53/55 (96%)
Frame = +1
Query: 1264 GTIKTFKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV 1428
G+ KT K+FEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTAD+TGKVELPENVKMV
Sbjct: 352 GSCKTAKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADVTGKVELPENVKMV 406
Score = 91.7 bits (226), Expect(3) = 1e-76
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = +3
Query: 1509 PENVKMVMPGDNVTAIFELISSVPLEAGQRFALREGGRTVGAGVVSKVIS 1658
PENVKMVMPGDNVTA+FELI VPLE GQRFALREGGRTVGAGVVSKV+S
Sbjct: 400 PENVKMVMPGDNVTAVFELILPVPLETGQRFALREGGRTVGAGVVSKVMS 449
>ref|XP_002872804.1| hypothetical protein ARALYDRAFT_490266 [Arabidopsis lyrata subsp.
lyrata] gi|297318641|gb|EFH49063.1| hypothetical protein
ARALYDRAFT_490266 [Arabidopsis lyrata subsp. lyrata]
Length = 454
Score = 232 bits (591), Expect(2) = 2e-85
Identities = 120/159 (75%), Positives = 129/159 (81%), Gaps = 8/159 (5%)
Frame = +2
Query: 44 MASFIIRNPNSKRLLSFSPC----CRRGPISTHVSFFESGNDQVSEF----GSLWRSMAT 199
MAS ++RNP+SKRL+ FS C S++ G D +S SLWRSMAT
Sbjct: 1 MASVVLRNPSSKRLVPFSSQIYSRCGASITSSYSISHSIGGDDLSSSTLGTSSLWRSMAT 60
Query: 200 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKRRGITIAT 379
FTR KPHVNVGTIGHVDHGKTTLTAAITKVLA+EGKAKAIAFDEIDKAPEEK+RGITIAT
Sbjct: 61 FTRNKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT 120
Query: 380 AHVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 496
AHVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGIL
Sbjct: 121 AHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGIL 159
Score = 112 bits (281), Expect(2) = 2e-85
Identities = 56/73 (76%), Positives = 57/73 (78%)
Frame = +1
Query: 553 VVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPXXXXXXXXXXXXXXSFYKFP 732
VVS PDGPMPQTKEHILLARQVGVPSLVCFLNKVD VDDP SFYKFP
Sbjct: 160 VVSGPDGPMPQTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFP 219
Query: 733 GDEIPIIRGSALS 771
GD+IPIIRGSALS
Sbjct: 220 GDDIPIIRGSALS 232
Score = 138 bits (348), Expect(3) = 1e-77
Identities = 68/83 (81%), Positives = 77/83 (92%), Gaps = 1/83 (1%)
Frame = +3
Query: 939 DVFSIQGRGTVVTGRVEQGTIKTGEDVEIQGLMQGG-PLKSTVTGVEMFKKILDHGEAGD 1115
DVFSIQGRGTV TGR+EQGTIK GE+VEI GL +GG PLKSTVTGVEMFKKILD+G+AGD
Sbjct: 274 DVFSIQGRGTVATGRIEQGTIKVGEEVEILGLREGGLPLKSTVTGVEMFKKILDNGQAGD 333
Query: 1116 NVGLLLRGLKRDDVQRGQVVSKP 1184
NVGLLLRGLKR+D+QRG V++KP
Sbjct: 334 NVGLLLRGLKREDIQRGMVIAKP 356
Score = 109 bits (272), Expect(3) = 1e-77
Identities = 51/55 (92%), Positives = 54/55 (98%)
Frame = +1
Query: 1264 GTIKTFKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV 1428
G+ KT+K+FEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV
Sbjct: 357 GSCKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMV 411
Score = 92.0 bits (227), Expect(3) = 1e-77
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = +3
Query: 1509 PENVKMVMPGDNVTAIFELISSVPLEAGQRFALREGGRTVGAGVVSKVIS 1658
PENVKMVMPGDNVTA+FELI VPLE GQRFALREGGRTVGAGVVSKV+S
Sbjct: 405 PENVKMVMPGDNVTAVFELIMPVPLETGQRFALREGGRTVGAGVVSKVMS 454