BLASTX nr result
ID: Coptis24_contig00013923
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00013923
(1098 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 65 1e-13
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 61 5e-13
emb|CAN65312.1| hypothetical protein VITISV_002752 [Vitis vinifera] 61 7e-13
emb|CAN68285.1| hypothetical protein VITISV_017014 [Vitis vinifera] 67 3e-12
emb|CAN67882.1| hypothetical protein VITISV_022356 [Vitis vinifera] 61 7e-12
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 65.1 bits (157), Expect(3) = 1e-13
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Frame = +2
Query: 746 ASHLKLSRDQFHSTNKEKKEMEKVPYASAVD---IA*CRPWPDNCATVGVVSRFLSNPGK 916
A+H +LS Q ST+ E+++ME++PYASAV A PD VGVVSRFLSNPGK
Sbjct: 1087 ANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGK 1146
Query: 917 EHCLAVKY 940
EH AVK+
Sbjct: 1147 EHWDAVKW 1154
Score = 30.4 bits (67), Expect(3) = 1e-13
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3
Query: 1038 DADIAGDVDYMKSTSRYL 1091
DAD+AGDVD KSTS YL
Sbjct: 1181 DADMAGDVDSRKSTSGYL 1198
Score = 27.3 bits (59), Expect(3) = 1e-13
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 934 EILKWILS*FKGFSSTCARLCFGFGSKKPLLERYT 1038
+ +KWIL +G S +LC FG P+L YT
Sbjct: 1150 DAVKWILRYLRGTS----KLCLCFGEDNPVLVGYT 1180
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 60.8 bits (146), Expect(3) = 5e-13
Identities = 37/68 (54%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Frame = +2
Query: 746 ASHLKLSRDQFHSTNKEKKEMEKVPYASAVD---IA*CRPWPDNCATVGVVSRFLSNPGK 916
A HLKLS+ +T +EK M KVPY+SAV A PD VGVVSRFL NPGK
Sbjct: 1086 AGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGK 1145
Query: 917 EHCLAVKY 940
EH AVK+
Sbjct: 1146 EHWEAVKW 1153
Score = 31.6 bits (70), Expect(3) = 5e-13
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 1038 DADIAGDVDYMKSTSRYLFT 1097
DAD+AGD+D KS++ YLFT
Sbjct: 1180 DADMAGDIDNRKSSTGYLFT 1199
Score = 28.1 bits (61), Expect(3) = 5e-13
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 934 EILKWILS*FKGFSSTCARLCFGFGSKKPLLERYT 1038
E +KWIL +G + C LCFG P+L+ YT
Sbjct: 1149 EAVKWILRYLRGTTGDC--LCFG--GSDPILKGYT 1179
>emb|CAN65312.1| hypothetical protein VITISV_002752 [Vitis vinifera]
Length = 1057
Score = 60.8 bits (146), Expect(3) = 7e-13
Identities = 38/68 (55%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = +2
Query: 749 SHLKLSRDQFHSTNKEKKEMEKVPYASAVD----IA*CRPWPDNCATVGVVSRFLSNPGK 916
SHLKLS Q S+ KEK+EM KV YASAV + C PD VGVVS+FLSN K
Sbjct: 938 SHLKLSSKQSPSSEKEKEEMRKVSYASAVGSLMYVMVCTR-PDIAHAVGVVSKFLSNLDK 996
Query: 917 EHCLAVKY 940
EH +AVK+
Sbjct: 997 EHWVAVKW 1004
Score = 31.2 bits (69), Expect(3) = 7e-13
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 1038 DADIAGDVDYMKSTSRYLFT 1097
D D+AGDVD KSTS YL T
Sbjct: 1031 DVDMAGDVDSRKSTSSYLIT 1050
Score = 28.1 bits (61), Expect(3) = 7e-13
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 940 LKWILS*FKGFSSTCARLCFGFGSKKPLL 1026
+KWIL +G S TC LCFG KP+L
Sbjct: 1002 VKWILKYLRGTSKTC--LCFGI--DKPML 1026
>emb|CAN68285.1| hypothetical protein VITISV_017014 [Vitis vinifera]
Length = 328
Score = 66.6 bits (161), Expect(3) = 3e-12
Identities = 38/66 (57%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = +2
Query: 749 SHLKLSRDQFHSTNKEKKEMEKVPYASAVDIA*CR--PWPDNCATVGVVSRFLSNPGKEH 922
SHLKLS Q S+ KEK+EM KVPYAS I PD VGVVSRF+SNPGKEH
Sbjct: 123 SHLKLSSKQSLSSEKEKEEMRKVPYASVTGILMYTICTGPDIANVVGVVSRFISNPGKEH 182
Query: 923 CLAVKY 940
+ VK+
Sbjct: 183 WVIVKW 188
Score = 26.2 bits (56), Expect(3) = 3e-12
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 1038 DADIAGDVDYMKSTSRYLFT 1097
DA++ GD+D KST YL T
Sbjct: 215 DANMVGDIDSRKSTFGYLIT 234
Score = 25.4 bits (54), Expect(3) = 3e-12
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 937 ILKWILS*FKGFSSTCARLCFG 1002
I+KWIL + S TC LCFG
Sbjct: 185 IVKWILRYLRNTSKTC--LCFG 204
>emb|CAN67882.1| hypothetical protein VITISV_022356 [Vitis vinifera]
Length = 1299
Score = 60.8 bits (146), Expect(3) = 7e-12
Identities = 34/67 (50%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = +2
Query: 749 SHLKLSRDQFHSTNKEKKEMEKVPYASAVD---IA*CRPWPDNCATVGVVSRFLSNPGKE 919
SH KLS++Q T +E+ M KVPYASA+ A PD VGVVSRF+S PGK+
Sbjct: 1059 SHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQ 1118
Query: 920 HCLAVKY 940
H AVK+
Sbjct: 1119 HWEAVKW 1125
Score = 30.8 bits (68), Expect(3) = 7e-12
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 1038 DADIAGDVDYMKSTSRYLFT 1097
DAD AGD+D KST+ ++FT
Sbjct: 1152 DADFAGDIDSRKSTTEFVFT 1171
Score = 25.0 bits (53), Expect(3) = 7e-12
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 934 EILKWILS*FKGFSSTCARLCFGFGSKK 1017
E +KWIL KG TC LCF S K
Sbjct: 1121 EAVKWILRYLKGSLDTC--LCFTGASLK 1146