BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012970
         (747 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532555.1| conserved hypothetical protein [Ricinus comm...    91   3e-16
dbj|BAD09445.1| hypothetical protein [Oryza sativa Japonica Grou...    86   6e-15
dbj|BAD08724.1| F-box protein family-like [Oryza sativa Japonica...    80   6e-13
dbj|BAD08729.1| F-box protein family-like [Oryza sativa Japonica...    75   1e-11
ref|XP_003594788.1| F-box/kelch-repeat protein [Medicago truncat...    75   1e-11

>ref|XP_002532555.1| conserved hypothetical protein [Ricinus communis]
           gi|223527710|gb|EEF29816.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 690

 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 1/163 (0%)
 Frame = +2

Query: 56  NPVFYNGLFYCLSKDGKLGIFNPEEEYEDVWKILVRALFPLQNIEYHLTSMRSFLVEYCG 235
           +PVFYNG+FY L + G L I    ++    W++L     P  +        ++FLVE  G
Sbjct: 531 SPVFYNGVFYYLGEKGNLAILEIIDDMV-TWEVLWDLKSPRSHCH------QNFLVECDG 583

Query: 236 EFFSFFV-PVNKPIDVFKLDRLERKWVRVESLGDKVAFLSHTTSVLVPAGLKGVENRIYL 412
              S FV      ++VF+L + +  W+RVE+LG+ +  +S ++S    A   G+EN+I+ 
Sbjct: 584 NLLSVFVGEFEGSVEVFRLSQSKMVWIRVENLGNYMVCVSRSSSFSSLAKAPGMENKIFF 643

Query: 413 PKFYGIDNMYYSLTTRSFSYFGSKDPCAKWIDSSEIFDCTWFQ 541
           P+FYG + ++YSL T  F  F  +    ++  S E   C WF+
Sbjct: 644 PRFYGENIVFYSLDTNKFHSFDRQKIPIEFYISREQLRCGWFE 686


>dbj|BAD09445.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|125603599|gb|EAZ42924.1| hypothetical protein
            OsJ_27514 [Oryza sativa Japonica Group]
          Length = 760

 Score = 86.3 bits (212), Expect = 6e-15
 Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
 Frame = +2

Query: 2    FDFFFDSRVPYKFMASHCNPVFYNGLFYCLSKDGKLGIFNPEEEYEDVWKIL-----VRA 166
            FDF  D  +   F  +  NPV++ G FY L + G L +FNP     + W+IL     +RA
Sbjct: 582  FDFENDEVM---FPVARNNPVYFRGEFYFLGQRGNLSVFNPGN---NEWRILDKPEPIRA 635

Query: 167  -LFPLQNIEYHLTSMRSFLVEYCGEFFSFFVP-VNKPIDVFKLDRLERKWVRVESLGDKV 340
             L P     Y       ++VE  GE  + F    N+P  V KLD  + +WV +E +G   
Sbjct: 636  DLTP-----YDEGKEACYMVELRGELIAVFHRNANEPPRVLKLDESKMEWVEIEDIGGGA 690

Query: 341  AFLSHTTSVLVPAGLKGVENRIYLPKFY--GIDNMYYSLTTRSFS--YFGSKDPCAKWID 508
             FL +  S+ +P+   G  NRIY PKF   G   ++Y L  + +S  ++G+K+P      
Sbjct: 691  LFLDYRASIALPSSEAGHGNRIYFPKFSEDGKKAIFYDLEAKKYSPMFYGAKEP------ 744

Query: 509  SSEIFDCTWFQANL*NSDIS 568
                 +C WF   L + + S
Sbjct: 745  ----MNCVWFVPKLQSDEYS 760


>dbj|BAD08724.1| F-box protein family-like [Oryza sativa Japonica Group]
            gi|42408294|dbj|BAD09449.1| F-box protein family-like
            [Oryza sativa Japonica Group] gi|125561733|gb|EAZ07181.1|
            hypothetical protein OsI_29426 [Oryza sativa Indica
            Group] gi|125603601|gb|EAZ42926.1| hypothetical protein
            OsJ_27515 [Oryza sativa Japonica Group]
          Length = 712

 Score = 79.7 bits (195), Expect = 6e-13
 Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
 Frame = +2

Query: 38   FMASHCNPVFYNGLFYCLSKDGKLGIFNPEEEYEDVWKILVRA--------LFPLQNIEY 193
            F   + NPV ++G FYCL + G LG+F+P     + W+IL +         LF     E 
Sbjct: 538  FPVGYNNPVMFDGKFYCLGRKGNLGVFDPTS---NTWRILDKPEPIHVEMDLFE----ED 590

Query: 194  HLTSMRSFLVEYCGEFFSFFVP-VNKPIDVFKLDRLERKWVRVESLGDKVAFLSHTTSVL 370
            H+     +LV+  GE  S F+   N+   VFKL+R E  WV VE +G    FL + +S  
Sbjct: 591  HIGREFCYLVDMDGELISVFLRNANELPRVFKLNRTEISWVEVEDIGGGALFLDYRSSYG 650

Query: 371  VPAGLKGVENRIYLPKFYGIDN--MYYSLTTRSF--SYFGSKDPCAKWIDSSEIFDCTWF 538
            V +   G  NRIY P+ Y  D   ++Y +  +++  S++G  +P           +C W 
Sbjct: 651  VASPDGGNGNRIYFPR-YSKDGKPVFYDMNKKTYSPSFYGVIEP----------LNCVWV 699

Query: 539  QANL 550
              NL
Sbjct: 700  VPNL 703


>dbj|BAD08729.1| F-box protein family-like [Oryza sativa Japonica Group]
            gi|125603604|gb|EAZ42929.1| hypothetical protein
            OsJ_27518 [Oryza sativa Japonica Group]
          Length = 710

 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 65/195 (33%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
 Frame = +2

Query: 14   FDSRVPYKFMASHCNPVFYNGLFYCLSKDGKLGIFNPEEEYEDVWKILVRA------LFP 175
            F+  VP  F   + NPV + G FYCL + G LG F+P     + W+IL +       +  
Sbjct: 530  FEYDVP--FPVGYNNPVMFCGKFYCLGRKGNLGAFDPTS---NTWEILDKPEPIHVEMDL 584

Query: 176  LQNIEYHLTSMRSFLVEYCGEFFSFFVP-VNKPIDVFKLDRLERKWVRVESLGDKVAFLS 352
            LQN   H      +LV+  GE  S  +   ++   VFKLD  +  WV VE +G    FL 
Sbjct: 585  LQND--HRGREFCYLVDLEGELISVLLHNASEAPRVFKLDLTKMSWVEVEDIGGGALFLD 642

Query: 353  HTTSVLVPAGLKGVENRIYLPK--------FYGIDN-MYYSLTTRSFSYFGSKDPCAKWI 505
            H TS  V +   G  NRIY P+        FY +DN MYY       S++G  +P     
Sbjct: 643  HRTSHGVGSPDGGHGNRIYFPRYSVDRKPVFYDMDNKMYYP------SFYGHIEP----- 691

Query: 506  DSSEIFDCTWFQANL 550
                  +C W   NL
Sbjct: 692  -----LNCVWVVPNL 701


>ref|XP_003594788.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355483836|gb|AES65039.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 354

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
 Frame = +2

Query: 35  KFMASHCNPVFYNGLFYCLSKDGKLGIFNPEEEYEDVWKILVRAL-FPLQNIEYHLTSMR 211
           +F   + +P+++NGLFYCLS  GKL +     E     KI ++ +  P      H     
Sbjct: 191 EFPTYNISPIYHNGLFYCLSMKGKLRVIEATRE-----KINLKEIEGPQAPYNKH---FN 242

Query: 212 SFLVEYCGEFFSFF-VPVNKPIDVFKLDRLERKWVRVESLGDKVAFLSHTTSVLVPAGLK 388
           +FL+E  G   +       K + VFKLD     W++VESL + + F+       V A + 
Sbjct: 243 NFLLECDGNLLAVLESSFGKGVKVFKLDESTMTWMKVESLKNHMLFVGKACFSTV-ANIP 301

Query: 389 GVENRIYLPKFYGIDNMYYSLTTRSFSYFGSKDPCAKWIDSSEIFDCTWFQ 541
           G+EN+IY P+FY    ++YSL T ++  F  K+    +    E  +  W Q
Sbjct: 302 GMENKIYFPRFYRQSVVFYSLDTNNYHTF--KNDVVNFRHVKEHLNGCWIQ 350