BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012950
         (1236 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ...   311   2e-82
ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v...   310   6e-82
emb|CBI26376.3| unnamed protein product [Vitis vinifera]              310   6e-82
dbj|BAF03494.1| XRCC4 homolog [Populus nigra]                         302   1e-79
ref|XP_002315726.1| predicted protein [Populus trichocarpa] gi|2...   294   3e-77

>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
           gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
           putative [Ricinus communis]
          Length = 265

 Score =  311 bits (797), Expect = 2e-82
 Identities = 155/239 (64%), Positives = 187/239 (78%), Gaps = 3/239 (1%)
 Frame = +2

Query: 32  TDVIFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETAEQYLGFR 211
           T+ IFVKGTWFDSHF+LSITDGLNAW+C A+E  V+ERA+QWDQPVSEYI  AE YLGF+
Sbjct: 23  TEPIFVKGTWFDSHFHLSITDGLNAWVCNATEGQVKERAAQWDQPVSEYINLAEHYLGFQ 82

Query: 212 QPGSSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKPSSDNKKSTTEILDFLMDANIRLS 391
           QPGS Y F+DAG+  +RLSWTFEK+G KLEWRWKC+PS DNK +T  ILDFLMDANIRLS
Sbjct: 83  QPGSIYRFADAGDSHKRLSWTFEKEGTKLEWRWKCQPSPDNKMTTAGILDFLMDANIRLS 142

Query: 392 EEVVRKTQSFEKLKVEAEKCLVQXXXXXXXXXXXXXAVYAKFVAVLNSKKAKLRELRDRL 571
           EEVV+KT SFE+LK EA+KCL Q             ++YAKF+AVLNSKK KLR+LRD+L
Sbjct: 143 EEVVKKTHSFERLKEEADKCLTQSERFAGEKTEFESSIYAKFLAVLNSKKRKLRQLRDQL 202

Query: 572 SKQDDTGKSPQ--EDESAGKTESFDEE-TDNDRSEGEAVESHPETSKTVPATRQYGRKR 739
           SK++ +GK PQ  E+ES  KTESF+E+ +D D+SE E  E    TS+  P++R  GRKR
Sbjct: 203 SKKEASGKLPQEEEEESTDKTESFEEDSSDGDKSEEEPPEKVTGTSEDKPSSRGRGRKR 261


>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
          Length = 259

 Score =  310 bits (793), Expect = 6e-82
 Identities = 154/244 (63%), Positives = 188/244 (77%), Gaps = 1/244 (0%)
 Frame = +2

Query: 11  KAEEVGNTDVIFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETA 190
           K +    ++ IF+K TWF SHF+LSITDGL+AW+C ASED+V ERA+QWDQPVS+YI  A
Sbjct: 11  KLQIPNQSEPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSDYIALA 70

Query: 191 EQYLGFRQPGSSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKPSSDNKKSTTEILDFLM 370
           E++LGF+QPGS Y FSDAG+G RRLSWTFEK+G KLEWRWKC  S D++ +T  +LDFLM
Sbjct: 71  ERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRSTTAGVLDFLM 130

Query: 371 DANIRLSEEVVRKTQSFEKLKVEAEKCLVQXXXXXXXXXXXXXAVYAKFVAVLNSKKAKL 550
           +ANIRLSEEVV KTQSFE+LKVEAEKCL Q             A+YAKF+ VLNSKKAKL
Sbjct: 131 NANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLGVLNSKKAKL 190

Query: 551 RELRDRLSKQDDTGKSPQ-EDESAGKTESFDEETDNDRSEGEAVESHPETSKTVPATRQY 727
           RELRD++SK++ TGK PQ EDES  KT SFD+E+DN+  E E+ ++   TSK V  +R  
Sbjct: 191 RELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVSTSRPR 250

Query: 728 GRKR 739
           GRKR
Sbjct: 251 GRKR 254


>emb|CBI26376.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score =  310 bits (793), Expect = 6e-82
 Identities = 154/244 (63%), Positives = 188/244 (77%), Gaps = 1/244 (0%)
 Frame = +2

Query: 11  KAEEVGNTDVIFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETA 190
           K +    ++ IF+K TWF SHF+LSITDGL+AW+C ASED+V ERA+QWDQPVS+YI  A
Sbjct: 11  KLQIPNQSEPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSDYIALA 70

Query: 191 EQYLGFRQPGSSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKPSSDNKKSTTEILDFLM 370
           E++LGF+QPGS Y FSDAG+G RRLSWTFEK+G KLEWRWKC  S D++ +T  +LDFLM
Sbjct: 71  ERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRSTTAGVLDFLM 130

Query: 371 DANIRLSEEVVRKTQSFEKLKVEAEKCLVQXXXXXXXXXXXXXAVYAKFVAVLNSKKAKL 550
           +ANIRLSEEVV KTQSFE+LKVEAEKCL Q             A+YAKF+ VLNSKKAKL
Sbjct: 131 NANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLGVLNSKKAKL 190

Query: 551 RELRDRLSKQDDTGKSPQ-EDESAGKTESFDEETDNDRSEGEAVESHPETSKTVPATRQY 727
           RELRD++SK++ TGK PQ EDES  KT SFD+E+DN+  E E+ ++   TSK V  +R  
Sbjct: 191 RELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVSTSRPR 250

Query: 728 GRKR 739
           GRKR
Sbjct: 251 GRKR 254


>dbj|BAF03494.1| XRCC4 homolog [Populus nigra]
          Length = 255

 Score =  302 bits (774), Expect = 1e-79
 Identities = 149/233 (63%), Positives = 179/233 (76%)
 Frame = +2

Query: 41  IFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETAEQYLGFRQPG 220
           IF+KGTWF  HFNLSITDGLN+W C A+E++V  RA+QWDQPVS YI+ AE++LGF+ PG
Sbjct: 19  IFIKGTWFPFHFNLSITDGLNSWFCNATEEEVRGRAAQWDQPVSTYIQLAEKHLGFQIPG 78

Query: 221 SSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKPSSDNKKSTTEILDFLMDANIRLSEEV 400
           S Y F+DAG G++RLSWTFEK+G KLEWRWKC+PS D KK+TT ILDFLMDANIRLSEEV
Sbjct: 79  SVYKFTDAGEGNKRLSWTFEKEGTKLEWRWKCQPSPDTKKTTTLILDFLMDANIRLSEEV 138

Query: 401 VRKTQSFEKLKVEAEKCLVQXXXXXXXXXXXXXAVYAKFVAVLNSKKAKLRELRDRLSKQ 580
           VRKTQSFE+LK EAEKCL Q             AVYAKF+ VLNSKK KLRELRD+LSK+
Sbjct: 139 VRKTQSFERLKGEAEKCLAQSEKFNSQKMEFEAAVYAKFLGVLNSKKRKLRELRDQLSKK 198

Query: 581 DDTGKSPQEDESAGKTESFDEETDNDRSEGEAVESHPETSKTVPATRQYGRKR 739
           + +G+S QE E + KTESFD  +D+++S  +  E    TSK  P  R Y RK+
Sbjct: 199 EISGESAQEGEDSDKTESFDRGSDDEKSVEKPREKLAGTSKDPPPRRGYVRKK 251


>ref|XP_002315726.1| predicted protein [Populus trichocarpa] gi|222864766|gb|EEF01897.1|
           predicted protein [Populus trichocarpa]
          Length = 233

 Score =  294 bits (753), Expect = 3e-77
 Identities = 140/208 (67%), Positives = 170/208 (81%)
 Frame = +2

Query: 41  IFVKGTWFDSHFNLSITDGLNAWMCTASEDDVEERASQWDQPVSEYIETAEQYLGFRQPG 220
           IF+KGTWF  HFNLSITDGLN+W C A+E++V +RA+QWDQPVS YI+ AE++LGF+ PG
Sbjct: 19  IFIKGTWFPFHFNLSITDGLNSWFCNATEEEVRDRAAQWDQPVSTYIQLAEKHLGFQIPG 78

Query: 221 SSYSFSDAGNGSRRLSWTFEKQGIKLEWRWKCKPSSDNKKSTTEILDFLMDANIRLSEEV 400
           S Y F+DAG G++RLSWTFEK+G KLEWRWKC+PS D KK+TT ILDFLMDANIRLSEEV
Sbjct: 79  SVYKFTDAGEGNKRLSWTFEKEGTKLEWRWKCQPSPDTKKTTTLILDFLMDANIRLSEEV 138

Query: 401 VRKTQSFEKLKVEAEKCLVQXXXXXXXXXXXXXAVYAKFVAVLNSKKAKLRELRDRLSKQ 580
           VRKTQSFE+LK EAEKCL Q             AVYAKF+ VLNSKK KLRELRD+LSK+
Sbjct: 139 VRKTQSFEQLKGEAEKCLAQSEKFNSQKMEFEAAVYAKFLGVLNSKKRKLRELRDQLSKK 198

Query: 581 DDTGKSPQEDESAGKTESFDEETDNDRS 664
           + +G+S QE+E + KTESFD  +D+++S
Sbjct: 199 EISGESAQEEEDSDKTESFDRGSDDEKS 226